{"id":"W2784013983","doi":"10.1128/msphere.00499-17","title":"Dating the Cryptococcus gattii Dispersal to the North American Pacific Northwest","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Prince Edward Island; Institut National de Santé Publique du Québec","funders":"National Institute of Allergy and Infectious Diseases; Centers for Disease Control and Prevention; National Institutes of Health","keywords":"Biological dispersal; Cryptococcus gattii; Enzootic; Biology; Geography; Panama; Ecology; Zoology; Cryptococcus; Demography; Population; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009253462,0.000112081,0.0001493229,0.00001201687,0.0006211445,0.00003759201,0.0001068883,0.00001278967,0.0003302582],"category_scores_gemma":[0.0001218687,0.00005203449,0.00006034335,0.0004520546,0.0002975505,0.00002615461,0.00007857099,0.0001572263,0.0005061724],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000305043,"about_ca_system_score_gemma":0.00002684409,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001915662,"about_ca_topic_score_gemma":0.04150177,"domain_scores_codex":[0.9992972,0.00003239012,0.0001301382,0.0001741297,0.0001425945,0.0002235287],"domain_scores_gemma":[0.9992829,0.00009305223,0.00004447816,0.0004035416,0.0001061125,0.00006992223],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000340587,0.00004451855,0.93151,0.000007329048,0.00007212305,0.000004736246,0.001906623,0.000008195846,0.00009741123,0.0001024252,0.04647754,0.01973498],"study_design_scores_gemma":[0.0001281343,0.0004076688,0.7351726,0.00001611098,0.00004097838,0.00001096628,0.004755619,0.0001159599,0.00004162008,0.000001902711,0.2592338,0.00007465106],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9680265,0.00007135752,0.0001443575,0.005883258,0.0002770416,0.0004075794,0.00001765682,0.00005882379,0.02511343],"genre_scores_gemma":[0.9961492,0.00001467049,0.0002101662,0.001151569,0.0009072351,0.00006964424,0.000006818521,0.00001518144,0.001475526],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2127562,"threshold_uncertainty_score":0.9759883,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01458023237073771,"score_gpt":0.274241553494344,"score_spread":0.2596613211236063,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}