{"id":"W2784323002","doi":"10.3390/genes9010023","title":"Identification of Transposable Elements Contributing to Tissue-Specific Expression of Long Non-Coding RNAs","year":2018,"lang":"en","type":"article","venue":"Genes","topic":"Cancer-related molecular mechanisms research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Research Organization of Information and Systems","keywords":"Biology; Subfamily; Transposable element; Endogenous retrovirus; Embryonic stem cell; Computational biology; Retrovirus; Long non-coding RNA; Genetics; Gene; Genome; RNA","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001927598,0.0002204907,0.0001834215,0.0008100187,0.0001275198,0.0002852861,0.0001314456,0.0001876278,0.001103567],"category_scores_gemma":[0.0004517811,0.0001515956,0.0003179605,0.0005423769,0.000177642,0.0001819758,0.0002160874,0.0003022498,0.0004728439],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001589404,"about_ca_system_score_gemma":0.0002343784,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006527061,"about_ca_topic_score_gemma":0.001381453,"domain_scores_codex":[0.9998569,0.00001535755,0.00001229682,0.00004959284,0.00003284677,0.00003294468],"domain_scores_gemma":[0.9996821,0.0001041909,0.00008276556,0.00003928094,0.00004700748,0.00004470786],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007840739,0.000009558436,0.00886653,0.00007637656,0.00001735141,0.0002565403,0.00007614856,0.000111025,0.9826841,0.000247389,0.00004577599,0.007530936],"study_design_scores_gemma":[0.00001792612,0.000310271,0.3557873,0.00003170087,0.0001467041,0.003524514,0.0002599193,0.003140694,0.6252525,0.000882844,0.01061664,0.00002904166],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9799936,0.002409915,0.01388324,0.00007988502,0.00001777958,0.00004520176,0.001215723,0.0001493623,0.002205346],"genre_scores_gemma":[0.9838625,0.001214753,0.009314399,0.00006407672,0.00001831297,0.00003096013,0.002429267,0.00004117455,0.003024532],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001103567,"threshold_uncertainty_score":0.003691852,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01313466028468972,"score_gpt":0.3001768344370096,"score_spread":0.2870421741523199,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}