{"id":"W2784323002","doi":"10.3390/genes9010023","title":"Identification of Transposable Elements Contributing to Tissue-Specific Expression of Long Non-Coding RNAs","year":2018,"lang":"en","type":"article","venue":"Genes","topic":"Cancer-related molecular mechanisms research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Research Organization of Information and Systems","keywords":"Biology; Subfamily; Transposable element; Endogenous retrovirus; Embryonic stem cell; Computational biology; Retrovirus; Long non-coding RNA; Genetics; Gene; Genome; RNA","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003771589,0.00008980618,0.0001302847,0.00007212577,0.00007782005,0.00001113028,0.0002008418,0.00009766545,0.00005177336],"category_scores_gemma":[0.00003815955,0.00009424657,0.00004811593,0.0001528549,0.00004748778,0.000003926004,0.00009894398,0.00003896376,0.00001273277],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000162456,"about_ca_system_score_gemma":0.00003840772,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008472226,"about_ca_topic_score_gemma":0.00001599588,"domain_scores_codex":[0.9988791,0.00003715326,0.0003384803,0.000266147,0.0002128171,0.0002662491],"domain_scores_gemma":[0.9991802,0.000005739944,0.0001298723,0.0003293846,0.0002965458,0.00005825924],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001067973,0.00002688541,0.0001493542,0.00003425706,0.00001805187,9.517433e-7,0.0000727169,0.00005199452,0.9857809,0.00001526224,0.0001985755,0.01354428],"study_design_scores_gemma":[0.0003671613,0.0002405234,0.0003219404,0.00005596533,0.000008248473,0.000001720802,0.00005257232,0.00008161275,0.9947313,0.00001318983,0.004036726,0.00008903575],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5703173,0.0006639501,0.4283287,0.00002551984,0.000157823,0.0003001669,0.00003106926,0.000004719363,0.0001707156],"genre_scores_gemma":[0.9981272,0.0002084594,0.001133832,0.00001385909,0.000153462,0.00001908929,0.00005648956,0.00001790359,0.0002697126],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4278099,"threshold_uncertainty_score":0.3843264,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01313466028468972,"score_gpt":0.3001768344370096,"score_spread":0.2870421741523199,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}