{"id":"W2784628271","doi":"10.1128/genomea.01561-17","title":"Complete Genome Sequence of an <i>Escherichia coli</i> O121:H19 Strain from an Outbreak in Canada Associated with Flour","year":2018,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Saskatchewan Disease Control Laboratory; Public Health Agency of Canada","funders":"","keywords":"Escherichia coli; Outbreak; Whole genome sequencing; Biology; Strain (injury); Serotype; Microbiology; Shiga toxin; Genome; Sequence (biology); Genetics; Virology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003184316,0.0002641108,0.0003349542,0.0000453664,0.0001291586,0.00002831647,0.0005377544,0.00008777309,0.00005338696],"category_scores_gemma":[0.0000607807,0.0002525803,0.00002990304,0.0002984926,0.0002305674,0.00002026183,0.0002016242,0.0001415422,0.000004199874],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003053725,"about_ca_system_score_gemma":0.001427177,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.3355433,"about_ca_topic_score_gemma":0.8606233,"domain_scores_codex":[0.9977666,0.0002031048,0.0003559133,0.0005741052,0.000491787,0.0006085322],"domain_scores_gemma":[0.9987026,0.00001425727,0.0001826173,0.0005423288,0.0003645224,0.0001936973],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000175768,0.000147382,0.02390452,0.00000982349,0.0002077506,0.00002094462,0.0002766887,0.000104513,0.9749477,0.000003432279,0.00004306344,0.0001584285],"study_design_scores_gemma":[0.003731661,0.004489435,0.9459691,0.00007025697,0.00006086239,0.000002887071,0.001943167,0.0008158362,0.007075319,0.0001266942,0.03463194,0.00108282],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992207,0.0001623698,0.00005482572,0.00005467531,0.0000790234,0.0003817501,0.006272765,0.000009083989,0.0007785208],"genre_scores_gemma":[0.9941256,0.00005126298,0.0006308398,0.0007318249,0.0001412194,0.00004404204,0.004097803,0.0000325596,0.0001448448],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9678724,"threshold_uncertainty_score":0.9999927,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02675741856623439,"score_gpt":0.2705225515786036,"score_spread":0.2437651330123692,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}