{"id":"W2785457829","doi":"10.1534/g3.118.200053","title":"Genomic Predictions and Genome-Wide Association Study of Resistance Against <i>Piscirickettsia salmonis</i> in Coho Salmon ( <i>Oncorhynchus kisutch</i> ) Using ddRAD Sequencing","year":2018,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":124,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Comisión Nacional de Investigación Científica y Tecnológica; Ministerio de Economía, Fomento y Turismo, Chile; Genome Canada; Universidad de Chile; Government of Canada; Genome British Columbia; Newton Fund","keywords":"Biology; Genotyping; Genetics; Single-nucleotide polymorphism; Genome; Population; Oncorhynchus; Genome-wide association study; Genotype; Gene; Fishery; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000495322,0.0002727559,0.0002074696,0.0004113714,0.0002280398,0.0002109911,0.000162933,0.0002001419,0.0009308317],"category_scores_gemma":[0.0005168811,0.0001070468,0.0004236026,0.0005283444,0.000158435,0.0000583412,0.0001855947,0.0002574,0.00008413151],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002452797,"about_ca_system_score_gemma":0.0002618977,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01059684,"about_ca_topic_score_gemma":0.01970369,"domain_scores_codex":[0.9997807,0.00005225729,0.00001371973,0.000101308,0.00003004068,0.00002201821],"domain_scores_gemma":[0.9996438,0.0001568365,0.00008182978,0.00002642867,0.00004378776,0.00004728209],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008283888,0.0001100915,0.8694487,0.0000785306,0.0008097937,0.0003038141,0.0002321583,0.003174938,0.1111988,0.0002085649,0.0003306341,0.01327556],"study_design_scores_gemma":[0.00003017329,0.000144764,0.9901977,0.000007399644,0.0001991808,0.00009315857,0.0001147907,0.006994381,0.001757773,0.00005417975,0.0003990157,0.000007657884],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986206,0.00004771748,0.0008683292,0.00001625372,0.000002076924,0.000007532014,0.0003212388,0.00000798263,0.0001082447],"genre_scores_gemma":[0.9974216,0.00003250932,0.001467838,0.00001751243,0.00000303245,0.00001469413,0.0008775149,0.000004881212,0.0001603407],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01059684,"threshold_uncertainty_score":0.0210703,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01613099934648582,"score_gpt":0.2400982079686214,"score_spread":0.2239672086221355,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}