{"id":"W2787610590","doi":"10.1016/j.diagmicrobio.2018.01.017","title":"PCR ribotyping and antimicrobial susceptibility testing of isolates of Clostridium difficile cultured from toxin-positive diarrheal stools of patients receiving medical care in Canadian hospitals: the Canadian Clostridium icile Surveillance Study (CAN-DIFF) 2013–2015","year":2018,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":false,"ca_institutions":"Public Health Agency of Canada; University of Manitoba; Diagnostic Services Manitoba","funders":"Merck","keywords":"Ribotyping; Clostridium difficile; Microbiology; Vancomycin; Moxifloxacin; Clostridiaceae; Agar dilution; Biology; Antimicrobial; Polymerase chain reaction; Medicine; Antibiotics; Toxin; Bacteria; Minimum inhibitory concentration; Staphylococcus aureus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006578381,0.0003601575,0.0008571629,0.0003505876,0.0003283915,0.0000256623,0.000224847,0.0002885247,0.00009194473],"category_scores_gemma":[0.008832747,0.0002947574,0.0001020251,0.0005844828,0.001437256,0.00005888868,0.00017583,0.0005257369,0.000002841954],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004228108,"about_ca_system_score_gemma":0.002079625,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7774072,"about_ca_topic_score_gemma":0.9617025,"domain_scores_codex":[0.9970152,0.0005195929,0.000827666,0.0006612347,0.0002028673,0.0007734367],"domain_scores_gemma":[0.9952683,0.002118507,0.0003105903,0.0004509901,0.001007157,0.000844405],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004025585,0.0005881956,0.9858059,0.0001674928,0.0001431072,0.00003502312,0.002055666,0.000004575365,0.009348333,0.000004474041,0.0003802878,0.001064441],"study_design_scores_gemma":[0.002919017,0.002066462,0.9623374,0.0004764918,0.0001667744,0.00001060222,0.0008390729,0.00006011528,0.03075411,0.00001335232,0.00006475831,0.0002919007],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9917044,0.001401281,8.69496e-7,0.000676846,0.0002360488,0.001662469,0.004193062,0.00001623274,0.0001087792],"genre_scores_gemma":[0.9987197,0.0003176468,0.00001232145,0.0001263485,0.0001431913,0.00002953763,0.0006198208,0.00002825638,0.000003183049],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1842953,"threshold_uncertainty_score":0.9999505,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008516669276408866,"score_gpt":0.259835341823531,"score_spread":0.2513186725471221,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}