{"id":"W2787610590","doi":"10.1016/j.diagmicrobio.2018.01.017","title":"PCR ribotyping and antimicrobial susceptibility testing of isolates of Clostridium difficile cultured from toxin-positive diarrheal stools of patients receiving medical care in Canadian hospitals: the Canadian Clostridium icile Surveillance Study (CAN-DIFF) 2013–2015","year":2018,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":false,"ca_institutions":"Public Health Agency of Canada; University of Manitoba; Diagnostic Services Manitoba","funders":"Merck","keywords":"Ribotyping; Clostridium difficile; Microbiology; Vancomycin; Moxifloxacin; Clostridiaceae; Agar dilution; Biology; Antimicrobial; Polymerase chain reaction; Medicine; Antibiotics; Toxin; Bacteria; Minimum inhibitory concentration; Staphylococcus aureus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007651432,0.0005443614,0.0005022623,0.002166881,0.001086619,0.000892023,0.000828775,0.0006580207,0.0009549774],"category_scores_gemma":[0.002798086,0.000553121,0.0007105945,0.002720702,0.0008168353,0.0002811157,0.0004855706,0.0006281856,0.0001774067],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.006420804,"about_ca_system_score_gemma":0.006604769,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8454311,"about_ca_topic_score_gemma":0.8705829,"domain_scores_codex":[0.9981934,0.0001074354,0.0001263394,0.0002834023,0.0006904699,0.0005987909],"domain_scores_gemma":[0.998482,0.0001326928,0.0003025936,0.00004845123,0.0007500364,0.0002842853],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003940914,0.0001239777,0.9869953,0.00007346212,0.00007524878,0.0003665357,0.0009639599,0.0001475103,0.005151008,0.00004440707,0.001104113,0.004560417],"study_design_scores_gemma":[0.000008387927,0.0001180769,0.9976756,0.00001334176,0.00002582984,0.0001646323,0.0007242706,0.0001253868,0.0006777671,0.000004713366,0.0004548686,0.000007154944],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932941,0.0003553488,0.0001534318,0.00008263662,0.00001976321,0.0000863234,0.004886743,0.00001425849,0.001107464],"genre_scores_gemma":[0.9951211,0.0002610228,0.0004792134,0.0001806565,0.000009347863,0.00002750331,0.003092096,0.000007729735,0.0008214356],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1545689,"threshold_uncertainty_score":0.3109582,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008516669276408866,"score_gpt":0.259835341823531,"score_spread":0.2513186725471221,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}