{"id":"W2787614078","doi":"10.1038/s41467-018-04295-5","title":"Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages","year":2018,"lang":"en","type":"article","venue":"Nature Communications","topic":"Malaria Research and Control","field":"Medicine","cited_by":137,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Medical Research Council; University of Texas Health Science Center at San Antonio; University of California, Riverside; National Institute of Food and Agriculture; Adolph C. and Mary Sprague Miller Institute for Basic Research in Science, University of California Berkeley; National Institutes of Health; Wellcome Trust; Agence Nationale de la Recherche; University of Oxford; Bloomberg Family Foundation; Gordon and Betty Moore Foundation; Natural Sciences and Engineering Research Council of Canada; Alfred P. Sloan Foundation; Johns Hopkins University; Bill and Melinda Gates Foundation","keywords":"Biology; Subtelomere; Gene; Genome; Heterochromatin; Genetics; Gene family; Plasmodium falciparum; Gene expression; Regulation of gene expression; Genomic organization; Malaria; Chromosome; Immunology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002141421,0.00007510886,0.000138431,0.0001536362,0.0002024574,0.00001319199,0.0004757381,0.0001518528,0.0001266818],"category_scores_gemma":[0.0001208639,0.00005191685,0.00002424001,0.0005846953,0.0001848818,0.00004005689,0.0000975781,0.0005621912,0.000009078301],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005499,"about_ca_system_score_gemma":0.0000630131,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002512592,"about_ca_topic_score_gemma":0.0005549269,"domain_scores_codex":[0.999263,0.0001141417,0.0001552892,0.0001102898,0.0002123318,0.0001449381],"domain_scores_gemma":[0.9984223,0.0001246963,0.00005249631,0.001011034,0.0003406055,0.00004888488],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002122029,0.0002957305,0.06639018,0.00007077406,0.00005828145,0.000002963049,0.003354961,0.000007705493,0.9213964,0.005328581,0.0002140683,0.002668132],"study_design_scores_gemma":[0.0009944998,0.00008676766,0.9145043,0.00004769605,0.00001785173,0.000008094104,0.0003196715,0.0001656478,0.05668669,0.0000386845,0.02706186,0.00006822892],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9597167,0.007812454,0.0002685635,0.03019366,0.00003983161,0.000679239,0.00002954765,0.0000438362,0.001216185],"genre_scores_gemma":[0.991054,0.007279458,0.001117937,0.0001249712,0.00006826461,0.00002470488,0.00008488441,0.00001328406,0.0002325075],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8647097,"threshold_uncertainty_score":0.2442472,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01882546532092904,"score_gpt":0.2932741971843931,"score_spread":0.2744487318634641,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}