{"id":"W2788525252","doi":"10.1002/pmic.201700253","title":"Identification of Native and Posttranslationally Modified HLA‐B*57:01‐Restricted HIV Envelope Derived Epitopes Using Immunoproteomics","year":2018,"lang":"en","type":"article","venue":"PROTEOMICS","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"National Health and Medical Research Council; Medical Research Council; Australian Research Council; University of New South Wales","keywords":"Epitope; Identification (biology); Computational biology; Human immunodeficiency virus (HIV); Virology; Human leukocyte antigen; Biology; Antigen; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001320393,0.000204373,0.000188553,0.0003246227,0.0001135378,0.000347628,0.0001242933,0.0002845559,0.0008426777],"category_scores_gemma":[0.0001560206,0.0001088879,0.0001603264,0.0001984722,0.0001312143,0.0002478843,0.000192061,0.0003234834,0.0003197701],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001072702,"about_ca_system_score_gemma":0.00009968971,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002104626,"about_ca_topic_score_gemma":0.0002635761,"domain_scores_codex":[0.9999422,0.000007205854,0.000002810674,0.00001435046,0.00001757276,0.00001586874],"domain_scores_gemma":[0.9999566,0.0000104364,0.00001351987,0.000004321713,0.000007603861,0.000007564955],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007742099,0.0000122811,0.0008322198,0.00004275385,0.000008094262,0.00006835427,0.00001900998,0.00005823374,0.995462,0.0000871141,0.00004044932,0.003292123],"study_design_scores_gemma":[0.00001229514,0.0002191946,0.047635,0.00002721032,0.00003700275,0.001424295,0.0001665457,0.003450921,0.9423886,0.0003934944,0.004231414,0.00001410107],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9900156,0.002133713,0.005711643,0.00008622346,0.00002039543,0.00002505167,0.0004892778,0.00003004749,0.001487942],"genre_scores_gemma":[0.984372,0.002394423,0.0103723,0.000163326,0.00001919782,0.0000349843,0.000914038,0.00002414475,0.001705605],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008426777,"threshold_uncertainty_score":0.002819061,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02657015708082536,"score_gpt":0.2789294960577794,"score_spread":0.2523593389769541,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}