{"id":"W2789312467","doi":"10.1128/mbio.02345-17","title":"Metagenomes Reveal Global Distribution of Bacterial Steroid Catabolism in Natural, Engineered, and Host Environments","year":2018,"lang":"en","type":"article","venue":"mBio","topic":"Steroid Chemistry and Biochemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":124,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Tula Foundation","keywords":"Actinobacteria; Biology; Metagenomics; Steroid; Bacteria; Host (biology); Proteobacteria; Sponge; Microorganism; Rhizosphere; Microbiology; Ecology; Gene; 16S ribosomal RNA; Botany; Genetics; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003186851,0.0005590442,0.0004336311,0.001291474,0.0002359441,0.0008355109,0.0001678004,0.0003503182,0.0004770187],"category_scores_gemma":[0.0005092887,0.0001847833,0.0006044267,0.001254462,0.0001372311,0.0003683014,0.000573316,0.0003270095,0.0002024186],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002388669,"about_ca_system_score_gemma":0.0002653115,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001410366,"about_ca_topic_score_gemma":0.001333622,"domain_scores_codex":[0.9996408,0.00004459887,0.00003366512,0.0001204815,0.00008738708,0.00007301832],"domain_scores_gemma":[0.9997067,0.00005322836,0.00009466701,0.00003228389,0.00006095135,0.00005220441],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000358359,0.00006152934,0.07390565,0.0001855852,0.0002090415,0.000106934,0.0002118435,0.0006805425,0.9135659,0.00005879615,0.00008365086,0.0105721],"study_design_scores_gemma":[0.00001785022,0.000405979,0.8599459,0.00004894816,0.0003729404,0.0007418776,0.001004222,0.005035891,0.1289518,0.0002317243,0.003196517,0.00004637918],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953141,0.000706195,0.001130937,0.00002815243,0.000004520915,0.000009089384,0.002510736,0.00004514476,0.0002511313],"genre_scores_gemma":[0.9933633,0.0003943128,0.00190983,0.00003128998,0.000005255095,0.00001420502,0.004035556,0.00002263129,0.0002237037],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001410366,"threshold_uncertainty_score":0.002804339,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003792638240919936,"score_gpt":0.2085255323060964,"score_spread":0.2047328940651765,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}