{"id":"W2789528970","doi":"10.3835/plantgenome2017.08.0075","title":"A Genome‐Wide Association Study of Apple Quality and Scab Resistance","year":2018,"lang":"en","type":"article","venue":"The Plant Genome","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"ca_institutions":"Vineland Research and Innovation Centre; Agriculture and Agri-Food Canada; University of Guelph; Dalhousie University","funders":"Canada Research Chairs","keywords":"Biology; Resistance (ecology); Genome-wide association study; Quality (philosophy); Genome; Genetics; Biotechnology; Computational biology; Gene; Agronomy; Single-nucleotide polymorphism; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005967902,0.0002775498,0.0002217832,0.0005153863,0.0002986228,0.0004710468,0.0001729145,0.0003771024,0.001547422],"category_scores_gemma":[0.0008589989,0.0001722599,0.0003291317,0.0006365715,0.0001870934,0.0001457736,0.0002636786,0.0004568576,0.0001268968],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001365872,"about_ca_system_score_gemma":0.0001968456,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002488466,"about_ca_topic_score_gemma":0.003229475,"domain_scores_codex":[0.9996523,0.0000921614,0.00002459662,0.0001440089,0.000048507,0.00003853186],"domain_scores_gemma":[0.9993673,0.0001879533,0.000146061,0.00006615045,0.0000482705,0.0001842992],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007278234,0.0001205037,0.9711025,0.00003028517,0.0004903961,0.0004660878,0.0002063094,0.00007146174,0.02107903,0.00008599216,0.0001921637,0.005427377],"study_design_scores_gemma":[0.00001368879,0.00006940231,0.9991266,0.000001995947,0.00007887709,0.0002039281,0.0000385482,0.0001506805,0.0001647301,0.00001931505,0.0001301414,0.000002064741],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990839,0.0001888131,0.0002349653,0.00004268228,0.000006567988,0.000004950039,0.0001480405,0.000006741246,0.0002833985],"genre_scores_gemma":[0.9991887,0.00007283915,0.0002322917,0.00002002207,0.000006496882,0.000004748291,0.0001907391,0.000003209743,0.0002808364],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002488466,"threshold_uncertainty_score":0.005176663,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02030487177816889,"score_gpt":0.2499617489392229,"score_spread":0.229656877161054,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}