{"id":"W2789645350","doi":"10.1093/nar/gky109","title":"The yeast Ty1 retrotransposon requires components of the nuclear pore complex for transcription and genomic integration","year":2018,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Nuclear Structure and Function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Retrotransposon; Biology; Chromatin; Nucleoporin; Genetics; Gene; Nuclear pore; Saccharomyces cerevisiae; Integrase; Genome; RNA polymerase III; Reverse transcriptase; RNA; Nuclear transport; Cell nucleus; Transposable element; Cytoplasm; RNA polymerase","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007438983,0.0004311935,0.0001614596,0.000137751,0.0002366114,0.0005188163,0.0002930717,0.0002558817,0.001279349],"category_scores_gemma":[0.0001717008,0.0001928561,0.0001717478,0.0001287428,0.0002010312,0.0002855441,0.000392159,0.0003718212,0.001113927],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000458291,"about_ca_system_score_gemma":0.0002973821,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001189706,"about_ca_topic_score_gemma":0.001811369,"domain_scores_codex":[0.9999127,0.000006508935,0.000006851694,0.00002313245,0.00003544861,0.00001538469],"domain_scores_gemma":[0.999874,0.00001237216,0.00003932856,0.0000180947,0.00001310855,0.00004304708],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008703254,0.000009257594,0.0003566167,0.00002366885,0.000003101204,0.00009162404,0.00001205568,0.000116273,0.9972862,0.0003676682,0.00004754399,0.001598978],"study_design_scores_gemma":[0.00001787429,0.00007989085,0.007253564,0.000009799317,0.00001424424,0.0008301403,0.00004158183,0.001608294,0.982637,0.0003383845,0.007161852,0.000007257123],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9893259,0.001426522,0.005989095,0.00009577029,0.00003435766,0.00001539735,0.0006033815,0.0003873016,0.00212234],"genre_scores_gemma":[0.9914758,0.0006507408,0.002730267,0.00001857196,0.000005757985,0.00001349197,0.001434174,0.00006493035,0.003606251],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001279349,"threshold_uncertainty_score":0.004279852,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05362580883257188,"score_gpt":0.3154263203157741,"score_spread":0.2618005114832022,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}