{"id":"W2789645350","doi":"10.1093/nar/gky109","title":"The yeast Ty1 retrotransposon requires components of the nuclear pore complex for transcription and genomic integration","year":2018,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Nuclear Structure and Function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Retrotransposon; Biology; Chromatin; Nucleoporin; Genetics; Gene; Nuclear pore; Saccharomyces cerevisiae; Integrase; Genome; RNA polymerase III; Reverse transcriptase; RNA; Nuclear transport; Cell nucleus; Transposable element; Cytoplasm; RNA polymerase","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004265799,0.0000773707,0.00007630286,0.00002912217,0.0005262675,0.00004044426,0.0002412443,0.0001094729,0.0000216628],"category_scores_gemma":[0.00005917266,0.00004748646,0.00006277802,0.00009123414,0.0006085195,0.000006346077,0.00005848808,0.0001325853,0.000003813679],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001869556,"about_ca_system_score_gemma":0.00001969907,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003454254,"about_ca_topic_score_gemma":0.00007764341,"domain_scores_codex":[0.9991308,0.0001232223,0.0001476226,0.0001990957,0.0002007867,0.0001985013],"domain_scores_gemma":[0.9993855,0.00001533789,0.00004298172,0.000299093,0.0002217962,0.00003532803],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005537773,0.00001163358,0.0002863218,0.00001590358,0.0000201265,6.413634e-8,0.0002452483,3.364788e-7,0.9811901,0.001296042,0.003121339,0.01325905],"study_design_scores_gemma":[0.001631473,0.002478706,0.2373844,0.00006503914,0.00004680004,0.00002298194,0.001206489,0.00229186,0.2545924,0.003157653,0.4968778,0.0002444037],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974535,0.00009259646,0.0002430133,0.0007337396,0.0001613294,0.0003780748,0.00003046751,0.000006159804,0.0009010951],"genre_scores_gemma":[0.9989733,0.0001032092,0.0002802835,0.00006439153,0.0002828922,0.000007945242,0.00004889285,0.00002215547,0.0002169444],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7265978,"threshold_uncertainty_score":0.4047677,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05362580883257188,"score_gpt":0.3154263203157741,"score_spread":0.2618005114832022,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}