{"id":"W2790046175","doi":"10.1128/mbio.02164-17","title":"Plasmid Negative Regulation of CPAF Expression Is Pgp4 Independent and Restricted to Invasive<i>Chlamydia trachomatis</i>Biovars","year":2018,"lang":"en","type":"article","venue":"mBio","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Public Health Agency; Public Health Agency of Canada","keywords":"Chlamydia trachomatis; Biology; Plasmid; Microbiology; Biovar; Virulence; Lymphogranuloma venereum; Serotype; Trachoma; Virology; Tissue tropism; Tropism; Replicon; Virulence factor; Gene; Genetics; Virus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007669382,0.0002615766,0.0002157508,0.000250381,0.000129414,0.0003952252,0.0001698266,0.0001852386,0.001633289],"category_scores_gemma":[0.0001608727,0.0001233682,0.0002738104,0.000166004,0.0003030087,0.0001478994,0.0003086913,0.0004290997,0.0003795213],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002774482,"about_ca_system_score_gemma":0.0001809406,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001469735,"about_ca_topic_score_gemma":0.001014071,"domain_scores_codex":[0.9998323,0.00001894262,0.000009668693,0.00003614072,0.00004368218,0.00005929789],"domain_scores_gemma":[0.999738,0.0000706752,0.00006236065,0.00004242925,0.00003289204,0.00005364644],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003988108,0.00001076164,0.00012719,0.000008733301,8.914926e-7,0.00001702276,0.000007009057,0.000004864291,0.9995441,0.00001806859,0.0000185367,0.000202936],"study_design_scores_gemma":[0.000006849512,0.000154487,0.0256403,0.00000474048,0.000004972706,0.0001922409,0.00006916232,0.0005259874,0.9723492,0.00002877777,0.001018151,0.000005222535],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965753,0.0003401654,0.00126006,0.00006679373,0.00001598306,0.00001599404,0.0006647282,0.00007764548,0.0009831557],"genre_scores_gemma":[0.9950693,0.000156135,0.000832492,0.00004398323,0.000006748734,0.00003127065,0.001332971,0.00003508813,0.002492142],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001633289,"threshold_uncertainty_score":0.005463898,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01860712035475695,"score_gpt":0.2776997887980046,"score_spread":0.2590926684432476,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}