{"id":"W2790637257","doi":"10.1371/journal.pone.0194355","title":"Exacerbation induces a microbiota shift in sputa of COPD patients","year":2018,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Chronic Obstructive Pulmonary Disease (COPD) Research","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"Natural Sciences and Engineering Research Council of Canada; Grifols; GlaxoSmithKline; Institut universitaire de cardiologie et de pneumologie de Québec, Université Laval; AstraZeneca","keywords":"Exacerbation; COPD; Sputum; Microbiology; Firmicutes; Pyrosequencing; Obstructive lung disease; Medicine; Proteobacteria; Bacteroidetes; Immunology; Biology; 16S ribosomal RNA; Internal medicine; Pathology; Bacteria; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001919566,0.0001883072,0.0004605392,0.0004359525,0.0004790759,0.0005529973,0.00009219842,0.0004875382,0.001808406],"category_scores_gemma":[0.001168786,0.0001887391,0.0002832229,0.0002976453,0.0002509634,0.0002674168,0.0004067274,0.0003362133,0.0003654443],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001924988,"about_ca_system_score_gemma":0.0002043999,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007526076,"about_ca_topic_score_gemma":0.0009190614,"domain_scores_codex":[0.9996247,0.00009790736,0.00003123124,0.00006458248,0.00009021421,0.00009134747],"domain_scores_gemma":[0.9996089,0.00007094326,0.0001276546,0.00002053878,0.0000521785,0.0001198371],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002336057,0.0002276503,0.843381,0.0001471696,0.0001010684,0.003433983,0.0009862307,0.00006138407,0.1278661,0.00006162719,0.0004431288,0.02095454],"study_design_scores_gemma":[0.00001040606,0.0003589299,0.9945596,0.00001341062,0.00002212805,0.002343742,0.0004707429,0.00008135756,0.00168794,0.00005340487,0.000393,0.000005392985],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989319,0.0005143654,0.00004671645,0.00005943589,0.00001219712,0.000007683374,0.0000419481,0.000002965517,0.0003827661],"genre_scores_gemma":[0.9992324,0.0002824444,0.00008631353,0.0001033099,0.00001749742,0.000005547556,0.000108064,0.000002366883,0.0001620374],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001808406,"threshold_uncertainty_score":0.006049693,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0374966937603664,"score_gpt":0.2763077044629466,"score_spread":0.2388110107025802,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}