{"id":"W2790881065","doi":"10.1016/j.virusres.2018.03.001","title":"Apple hammerhead viroid-like RNA is a bona fide viroid: Autonomous replication and structural features support its inclusion as a new member in the genus Pelamoviroid","year":2018,"lang":"en","type":"article","venue":"Virus Research","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":47,"is_retracted":false,"has_abstract":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"Ministerio de Economía y Competitividad; Canadian Food Inspection Agency","keywords":"Viroid; Biology; RNA; Hammerhead ribozyme; Ribozyme; Virology; Genetics; Ligase ribozyme; Plant virus; Gene; Virus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002565691,0.0002740829,0.0002943135,0.0001239134,0.001975416,0.0002963662,0.001077179,0.000206507,0.000979587],"category_scores_gemma":[0.0009212893,0.000106847,0.00007971749,0.00115693,0.000532878,0.0003009727,0.002086551,0.0008394421,0.0004786674],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001442047,"about_ca_system_score_gemma":0.0001409805,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.01917493,"about_ca_topic_score_gemma":0.02278779,"domain_scores_codex":[0.9954383,0.0006030166,0.0003549288,0.0009461229,0.001610429,0.001047148],"domain_scores_gemma":[0.9981369,0.0008454596,0.00008644846,0.0003664559,0.0002227782,0.0003418957],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003156929,0.00006264701,0.0004343932,0.00001342615,0.00002209503,0.00004776447,0.00410743,4.339431e-7,0.7369457,0.0001323759,0.1578549,0.1000632],"study_design_scores_gemma":[0.0006543114,0.001572026,0.116553,0.00004174338,0.00001215217,0.0001682064,0.001527533,0.0003524266,0.129272,0.003131462,0.7462028,0.0005124355],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9801061,0.001635276,4.97166e-7,0.0135767,0.00005290038,0.001054442,0.0004465564,0.00005115743,0.003076414],"genre_scores_gemma":[0.989602,0.00144764,0.00004670836,0.001662648,0.0006287207,0.000130314,0.0001913281,0.000005387592,0.00628531],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6076737,"threshold_uncertainty_score":0.9999337,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08108603339592187,"score_gpt":0.368190098764192,"score_spread":0.2871040653682702,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}