{"id":"W2791065031","doi":"10.1016/j.gene.2018.03.031","title":"The matrices and constraints of GT/AG splice sites of more than 1000 species/lineages","year":2018,"lang":"en","type":"article","venue":"Gene","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Winnipeg; University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Research Manitoba","keywords":"Biology; splice; Evolutionary biology; Genetics; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007666927,0.0003840868,0.0005657869,0.002083792,0.001155884,0.001615635,0.0005914785,0.0005700761,0.005820004],"category_scores_gemma":[0.003679079,0.0004708006,0.0007231661,0.003289141,0.0007228216,0.0008600127,0.0006013741,0.001038131,0.001510368],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007138773,"about_ca_system_score_gemma":0.0008391237,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003492095,"about_ca_topic_score_gemma":0.009112617,"domain_scores_codex":[0.9992298,0.0001750559,0.00007014546,0.0002823607,0.0001763586,0.00006623402],"domain_scores_gemma":[0.9967823,0.001653702,0.0006460562,0.0003501516,0.0003053712,0.0002623367],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001592206,0.0001397682,0.2048118,0.001738523,0.00159044,0.001799571,0.002668184,0.0589413,0.4508705,0.1029113,0.006992497,0.165944],"study_design_scores_gemma":[0.0002094054,0.0003509192,0.4961734,0.0003660925,0.001355099,0.00279693,0.00195144,0.1089688,0.05343471,0.2282114,0.1059173,0.0002644672],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9432747,0.002046036,0.03218035,0.0003408963,0.00003851666,0.00003165422,0.0114467,0.0003370836,0.01030405],"genre_scores_gemma":[0.9684061,0.0007531901,0.02109137,0.0001041678,0.00003754812,0.00004085577,0.007866784,0.0002173105,0.001482648],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005820004,"threshold_uncertainty_score":0.01946986,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01260973819879561,"score_gpt":0.2756342206218449,"score_spread":0.2630244824230493,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}