{"id":"W2791346574","doi":"10.1093/gbe/evy034","title":"The DNA Methylation Landscape of Stickleback Reveals Patterns of Sex Chromosome Evolution and Effects of Environmental Salinity","year":2018,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":86,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Stickleback; DNA methylation; Epigenetics; Gasterosteus; Evolutionary biology; Dosage compensation; Context (archaeology); Genetics; Genome; Chromosome; Gene; Fishery","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003491084,0.00008666727,0.000146161,0.00003067771,0.00008589101,0.000002059214,0.00005531836,0.0001683242,0.000004225887],"category_scores_gemma":[0.00006938103,0.00006862321,0.0000327531,0.00003815041,0.0003051164,0.000004151798,0.00006822695,0.00003631827,5.637389e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001075886,"about_ca_system_score_gemma":0.00001601136,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002322502,"about_ca_topic_score_gemma":0.00001474021,"domain_scores_codex":[0.9992451,0.0001589119,0.0002518458,0.0001780266,0.00005179291,0.0001143176],"domain_scores_gemma":[0.9994863,0.00006382093,0.0002155912,0.0001616879,0.00004380896,0.00002878346],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005448316,0.00002259816,0.1878594,0.00004369404,0.00003307444,2.435834e-8,0.00006558727,0.000002620909,0.8104282,0.000206019,0.000001711769,0.001282564],"study_design_scores_gemma":[0.0002989886,0.0007797542,0.6960926,0.000009144749,0.00002833045,9.517248e-7,0.00005513419,0.00004612225,0.3009667,0.001519289,0.0001441943,0.00005873624],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9846722,0.009153063,0.00580624,0.0000132646,0.00009107263,0.0001629448,0.00006395789,0.000002025655,0.00003522456],"genre_scores_gemma":[0.9980528,0.001587088,0.0001167718,0.000004463361,0.0001139379,0.000004699734,0.00008864015,0.000005491865,0.00002608353],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5094614,"threshold_uncertainty_score":0.2798373,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005166263829043121,"score_gpt":0.2291302797431008,"score_spread":0.2239640159140577,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}