{"id":"W2791741114","doi":"10.1038/s41559-018-0522-6","title":"Reply to 'Eukaryote lateral gene transfer is Lamarckian'","year":2018,"lang":"en","type":"letter","venue":"Nature Ecology & Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Eukaryote; Gene transfer; Horizontal gene transfer; Computational biology; Evolutionary biology; Biology; Gene; Genetics; Phylogenetics; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0001890663,0.0003792678,0.0003363489,0.0001515557,0.0002110215,0.00002250035,0.0005408714,0.004700844,0.0003042392],"category_scores_gemma":[0.00005823193,0.0004054231,0.0002512715,0.0001404661,0.0001526518,0.000005556975,0.0001979377,0.001764529,0.0004093806],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001391174,"about_ca_system_score_gemma":0.0001856159,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004558608,"about_ca_topic_score_gemma":0.0001015753,"domain_scores_codex":[0.9978206,0.0001736212,0.0002431669,0.0009525847,0.000209198,0.0006008951],"domain_scores_gemma":[0.9989309,0.00001450644,0.00006789627,0.0006510012,0.0002395122,0.00009612968],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001502549,0.00002395122,0.007589265,0.00003555159,0.0001787401,0.00005975723,0.00004172841,0.000001965592,0.01355645,0.00001086816,0.9783038,0.00004767607],"study_design_scores_gemma":[0.0004223663,0.0006293589,0.06063963,0.0000143528,0.0001003618,0.00007063982,0.000001743463,0.000003563411,0.01608801,0.0002490403,0.9213365,0.0004444854],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.3896567,0.001624053,0.001032667,0.5984728,0.005004042,0.001288105,0.001416365,0.00008101841,0.001424256],"genre_scores_gemma":[0.1470531,0.00005557981,0.0004753154,0.8311004,0.008780736,0.00004296822,0.002684584,0.00005255499,0.009754791],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.2426036,"threshold_uncertainty_score":0.9998398,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004857725809029097,"score_gpt":0.2162479997052371,"score_spread":0.211390273896208,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}