{"id":"W2791778935","doi":"10.1093/treephys/tpx070","title":"An extended model of heartwood secondary metabolism informed by functional genomics","year":2017,"lang":"en","type":"review","venue":"Tree Physiology","topic":"Plant biochemistry and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Australian Research Council; Genome British Columbia; Genome Canada","keywords":"Sandalwood; Bioproducts; Santalum album; Secondary metabolism; Transcriptome; Phenylpropanoid; Terpenoid; Biology; Metabolism; Chemistry; Biosynthesis; Botany; Computational biology; Biochemistry; Gene; Biotechnology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001036807,0.0004631861,0.001303561,0.00005065972,0.0001079898,0.00001380972,0.0006510017,0.0008449433,0.00004534349],"category_scores_gemma":[0.00004557683,0.0003861348,0.0005145387,0.00003182861,0.0002528139,0.000008308395,0.0001750591,0.000253377,0.00001506578],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001760225,"about_ca_system_score_gemma":0.0008408051,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001191942,"about_ca_topic_score_gemma":0.00001702991,"domain_scores_codex":[0.9983458,0.00009671297,0.0005137981,0.0006074187,0.00009900647,0.0003372883],"domain_scores_gemma":[0.9981943,0.00003012988,0.0005840156,0.000999884,0.00006750163,0.0001241272],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001089946,0.0001448162,1.056217e-7,0.001938154,0.0004011205,6.110893e-7,0.000004333126,0.000007257145,0.6915724,0.00001802156,0.005133842,0.3006704],"study_design_scores_gemma":[0.0002764288,0.0001185638,0.00001184281,0.0001536415,0.0004079114,0.00003368605,0.000004004884,0.00005728754,0.05148482,0.00009284026,0.9469033,0.0004557005],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003698456,0.9916388,0.00004192401,0.00001029072,0.0001569536,0.0002491673,0.003017925,0.00001552989,0.001170914],"genre_scores_gemma":[0.002411298,0.9857449,0.0002439276,0.00007252987,0.0004762232,0.00005451496,0.009606539,0.00004364195,0.001346409],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9417694,"threshold_uncertainty_score":0.999859,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05847478867427149,"score_gpt":0.3140082522392867,"score_spread":0.2555334635650153,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}