{"id":"W2791986282","doi":"10.14745/ccdr.v43i09a05","title":"Salmonella Thompson outbreak associated with consumption of chicken shawarma and the usefulness of genome sequencing in the investigation","year":2017,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; McGill University; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Ministère de la Santé et des Services Sociaux (Québec)","funders":"Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"Outbreak; Salmonella; Serotype; Genome; Biology; Whole genome sequencing; Geography; Genetics; Virology; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003968271,0.0002497651,0.00009532197,0.0006708414,0.001210603,0.0007442087,0.0004344371,0.000477814,0.0009611552],"category_scores_gemma":[0.00112334,0.0001547988,0.0001179723,0.0007127574,0.0005865893,0.0002511198,0.0003378452,0.0005183934,0.00009688231],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.006927863,"about_ca_system_score_gemma":0.005838931,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8779888,"about_ca_topic_score_gemma":0.9174949,"domain_scores_codex":[0.9996574,0.00005279848,0.00001785861,0.00004221446,0.0001316374,0.00009802435],"domain_scores_gemma":[0.9992107,0.00009040727,0.0001473536,0.00002686176,0.0003754889,0.0001492271],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002257864,0.00008424348,0.9585486,0.0001202057,0.00002343922,0.01098403,0.001817289,0.0004609014,0.01243884,0.0001545461,0.002396066,0.01274599],"study_design_scores_gemma":[0.000007846345,0.0001103892,0.9886663,0.00006711837,0.00001709636,0.002930341,0.003401439,0.0008467726,0.001248602,0.00004125219,0.002649824,0.00001312851],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948442,0.0004363722,0.0003167626,0.0007712441,0.00002257273,0.00006201167,0.0004352439,0.00001878282,0.003092817],"genre_scores_gemma":[0.9980103,0.0003366528,0.0006270489,0.0002147263,0.00001120623,0.000006250747,0.000236961,0.000003259632,0.0005536741],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1220112,"threshold_uncertainty_score":0.2454594,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06784050239748035,"score_gpt":0.2404377102335843,"score_spread":0.1725972078361039,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}