{"id":"W2792111214","doi":"10.14745/ccdr.v42i12a06","title":"Invasive serogroup W Neisseria meningitidis (MenW) in Ontario, Canada shows potential clonal replacement during the period January 1, 2009 – June 30, 2016","year":2016,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Public Health Ontario; Public Health Agency of Canada","funders":"European Commission; University of Oxford; Wellcome Trust","keywords":"Neisseria meningitidis; clone (Java method); Multilocus sequence typing; Meningococcal disease; Microbiology; Biology; Public health; Medicine; Veterinary medicine; Genotype; Bacteria; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002433347,0.0002473404,0.0001351899,0.0006890532,0.001821463,0.0006111385,0.0004457248,0.0002114254,0.001536871],"category_scores_gemma":[0.0008531071,0.0001699033,0.0001656566,0.001322507,0.0006187459,0.0002434897,0.0004605876,0.0003368439,0.0001088091],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01605348,"about_ca_system_score_gemma":0.02428274,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9920906,"about_ca_topic_score_gemma":0.9963701,"domain_scores_codex":[0.9995837,0.00001756271,0.00001725387,0.00005009544,0.0001671282,0.00016428],"domain_scores_gemma":[0.9992132,0.00003410744,0.0002314169,0.00001648377,0.0003197777,0.0001849038],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001175298,0.00002704144,0.9809125,0.000100837,0.00002345065,0.0006029585,0.001704256,0.0001675564,0.001836335,0.0001131597,0.002394673,0.01199951],"study_design_scores_gemma":[0.000003087444,0.00002151402,0.9966864,0.00002763443,0.000007860664,0.0001532845,0.001283377,0.000126566,0.0001680203,0.00001274985,0.001505367,0.000004065291],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9918814,0.001122565,0.0001547417,0.0004586813,0.00001595043,0.00005456135,0.00184911,0.00001513331,0.004447833],"genre_scores_gemma":[0.9972267,0.000689365,0.000156382,0.00009120214,0.000006304685,0.0000066282,0.0006652486,0.000002724741,0.001155332],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01605348,"threshold_uncertainty_score":0.1164767,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007150849806043756,"score_gpt":0.1956490527919658,"score_spread":0.188498202985922,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}