{"id":"W2792111214","doi":"10.14745/ccdr.v42i12a06","title":"Invasive serogroup W Neisseria meningitidis (MenW) in Ontario, Canada shows potential clonal replacement during the period January 1, 2009 – June 30, 2016","year":2016,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Public Health Ontario; Public Health Agency of Canada","funders":"European Commission; University of Oxford; Wellcome Trust","keywords":"Neisseria meningitidis; clone (Java method); Multilocus sequence typing; Meningococcal disease; Microbiology; Biology; Public health; Medicine; Veterinary medicine; Genotype; Bacteria; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002724596,0.0002976714,0.0003837138,0.00005291563,0.0007045526,0.00003872099,0.0004832709,0.0001004877,0.005266396],"category_scores_gemma":[0.0001182638,0.0002015613,0.00009664817,0.0001125953,0.0001100948,0.0001515157,0.0003885237,0.0003563433,0.000009468902],"about_ca_system_candidate":true,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001719915,"about_ca_system_score_gemma":0.01125599,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9987321,"about_ca_topic_score_gemma":0.9999423,"domain_scores_codex":[0.9979703,0.0002688105,0.0006742239,0.0004010986,0.00007630279,0.0006092807],"domain_scores_gemma":[0.9979396,0.0001051072,0.000279028,0.001402321,0.0001260777,0.0001478996],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001761925,0.0003706062,0.4991701,0.00006928833,0.0009803528,0.00212182,0.0001724899,0.0001129148,0.1986743,0.0001354557,0.2960722,0.0003585028],"study_design_scores_gemma":[0.002185813,0.00004965965,0.5486254,0.0002261473,0.0001157947,0.0009353289,0.0004742719,0.00000181543,0.004621988,0.00003492187,0.4421937,0.000535098],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926552,0.001632087,0.000002022718,0.002488522,0.00161272,0.0004052538,0.000209401,0.00002783769,0.0009669191],"genre_scores_gemma":[0.9684519,0.0001186548,0.00000575478,0.0001670822,0.00004448527,0.0001272693,0.0002811924,0.00002326359,0.03078038],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1940523,"threshold_uncertainty_score":0.9956429,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007150849806043756,"score_gpt":0.1956490527919658,"score_spread":0.188498202985922,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}