{"id":"W2792433493","doi":"10.3389/fcimb.2018.00037","title":"Systematic Identification of Intracellular-Translocated Candidate Effectors in Edwardsiella piscicida","year":2018,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Natural Science Foundation of China; Trinity Western University","keywords":"Effector; Biology; Secretion; Virulence; Microbiology; Type three secretion system; Cell biology; Gene; Genetics; Biochemistry","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006476066,0.0001499775,0.0003479502,0.0002752728,0.00005032197,0.00001284328,0.00009668928,0.0002048582,0.000006529373],"category_scores_gemma":[0.0001358197,0.0001404861,0.00005059746,0.0002403643,0.0003605447,0.000007672525,0.00006542959,0.0001069766,0.000004060911],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004103097,"about_ca_system_score_gemma":0.00003621619,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002348375,"about_ca_topic_score_gemma":0.0003779242,"domain_scores_codex":[0.9985278,0.0003568617,0.000485529,0.0003363581,0.0000390738,0.0002543992],"domain_scores_gemma":[0.9995048,0.00001488916,0.0001426224,0.0002179849,0.00008597968,0.0000337336],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009065117,0.00005413859,0.05850243,0.0009748174,0.00006659175,0.000001651435,0.0001394536,0.000009820297,0.9397329,0.000006212007,0.0002810246,0.0001403125],"study_design_scores_gemma":[0.0008178671,0.0003227921,0.007436979,0.000207874,0.00002076853,0.00001207545,0.0000719057,0.0002127505,0.9901639,0.00003252305,0.0005478407,0.0001527665],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.984915,0.00201967,0.01179518,0.00002863005,0.0006668414,0.000500735,0.00001450879,0.000007228898,0.00005218075],"genre_scores_gemma":[0.998785,0.0007197883,0.0001454428,0.00001703369,0.00006389005,0.00003807321,0.0001233381,0.00001324628,0.00009414169],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05106545,"threshold_uncertainty_score":0.5728856,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003676827922758289,"score_gpt":0.225988372227425,"score_spread":0.2223115443046667,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}