{"id":"W2792453656","doi":"10.1007/s00792-017-0988-1","title":"Description of a cryptic thermophilic (pro)phage, CBP1 from Caldibacillus debilis strain GB1","year":2018,"lang":"en","type":"article","venue":"Extremophiles","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Manitoba","funders":"University of Manitoba; Genome Canada","keywords":"Biology; Siphoviridae; Genetics; Gene; Lysogenic cycle; Genome; Bacteriophage; ORFS; Open reading frame; Peptide sequence; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00009897367,0.0001797856,0.0001934249,0.00004227672,0.0001371984,0.00004081327,0.0002554333,0.0000948804,0.01694788],"category_scores_gemma":[0.00003421889,0.0001592902,0.0001092545,0.0001836386,0.0004453016,0.000318884,0.0001352665,0.0001183328,0.001378703],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001116317,"about_ca_system_score_gemma":0.00001210813,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002592242,"about_ca_topic_score_gemma":0.001243801,"domain_scores_codex":[0.9988484,0.00006296887,0.000300825,0.0003628944,0.0001633117,0.0002615868],"domain_scores_gemma":[0.9993345,0.00004056849,0.0001302725,0.0003761679,0.00002228133,0.00009620358],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002943817,0.0001160114,0.0009367848,0.000004073841,0.0000181567,0.000005799564,0.0009168058,0.000006519565,0.9646159,0.00002602665,0.001401083,0.03192335],"study_design_scores_gemma":[0.0009479554,0.0004776634,0.8803439,0.0001540263,0.0001056043,0.00004485579,0.0007024283,0.001060531,0.07728809,0.005893443,0.03230181,0.0006797301],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9891447,0.00007834403,0.0004154865,0.0002262269,0.0003781377,0.0001934754,0.0001219595,0.00005311081,0.009388492],"genre_scores_gemma":[0.9956146,0.00002173895,0.001948972,0.0001646336,0.0002716517,0.000009711433,0.00004031105,0.00002289881,0.00190548],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8873278,"threshold_uncertainty_score":0.9993988,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02552837097379654,"score_gpt":0.2398284402372556,"score_spread":0.2143000692634591,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}