{"id":"W2793119114","doi":"10.1097/txd.0000000000000752","title":"Polyomavirus BK Nephropathy-Associated Transcriptomic Signatures: A Critical Reevaluation","year":2018,"lang":"en","type":"article","venue":"Transplantation Direct","topic":"Polyomavirus and related diseases","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Transcriptome; Medicine; RNA; Gene; Disease; Biomarker; DNA microarray; Computational biology; Cancer research; Biology; Pathology; Gene expression; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000224661,0.0002130738,0.00029429,0.0001776896,0.0002097485,0.00003194236,0.00007637106,0.0002411831,0.0008445113],"category_scores_gemma":[0.0001930585,0.0001836167,0.0001772243,0.0003385741,0.0002298496,0.0001643333,0.000002944746,0.0002082946,0.0002939187],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008057546,"about_ca_system_score_gemma":0.0001757095,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002765385,"about_ca_topic_score_gemma":0.000213943,"domain_scores_codex":[0.9983575,0.0001593547,0.0003486697,0.000345292,0.0004334596,0.0003557414],"domain_scores_gemma":[0.9991124,0.0002122566,0.00005707834,0.0001948424,0.0001824152,0.0002409537],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0153039,0.003817084,0.01398078,0.00103745,0.001407353,0.001093918,0.01331689,0.0000584636,0.9085924,0.003495779,0.01284631,0.02504967],"study_design_scores_gemma":[0.02549571,0.004758208,0.6053902,0.002823825,0.01020119,0.0004996316,0.0003802492,0.01241673,0.3250988,0.001763777,0.009128781,0.00204297],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9688952,0.001982762,0.0007480129,0.000907755,0.0006063914,0.0005104711,0.0002212847,0.0003988445,0.0257293],"genre_scores_gemma":[0.9968998,0.0005554275,0.0001662629,0.001067022,0.0002592199,0.00002902648,0.0002880286,0.00003904593,0.0006961911],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5914094,"threshold_uncertainty_score":0.9246807,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02152469275543928,"score_gpt":0.3172125819836804,"score_spread":0.2956878892282411,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}