{"id":"W2793119114","doi":"10.1097/txd.0000000000000752","title":"Polyomavirus BK Nephropathy-Associated Transcriptomic Signatures: A Critical Reevaluation","year":2018,"lang":"en","type":"article","venue":"Transplantation Direct","topic":"Polyomavirus and related diseases","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Transcriptome; Medicine; RNA; Gene; Disease; Biomarker; DNA microarray; Computational biology; Cancer research; Biology; Pathology; Gene expression; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002866834,0.0003641366,0.0007968328,0.001487948,0.000290387,0.00174053,0.0005162093,0.0004260271,0.0006826811],"category_scores_gemma":[0.002222224,0.0001423824,0.0005119782,0.001246153,0.000822129,0.00150221,0.0006152821,0.0009209956,0.0001683369],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004848442,"about_ca_system_score_gemma":0.0008189088,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004888675,"about_ca_topic_score_gemma":0.001131812,"domain_scores_codex":[0.9994722,0.000119685,0.00007162373,0.0001358824,0.000140839,0.00005978704],"domain_scores_gemma":[0.9980651,0.0009685092,0.0002387921,0.0001983288,0.0004222028,0.0001070796],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.001029881,0.0001922811,0.23753,0.005690705,0.0007473335,0.001793014,0.001310628,0.001123609,0.3383585,0.003476955,0.006116772,0.4026302],"study_design_scores_gemma":[0.00003483019,0.0009516258,0.8137476,0.001861959,0.0008851566,0.009572916,0.004518998,0.004938354,0.0327143,0.01103641,0.1196293,0.0001084069],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6817288,0.2595456,0.02947574,0.02157928,0.001108668,0.0001296786,0.003112012,0.0002817834,0.003038375],"genre_scores_gemma":[0.8478578,0.1081809,0.03338258,0.005552427,0.001421976,0.0001702918,0.002155788,0.0001082028,0.001169995],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002866834,"threshold_uncertainty_score":0.01516145,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02152469275543928,"score_gpt":0.3172125819836804,"score_spread":0.2956878892282411,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}