{"id":"W2793425122","doi":"10.1111/nph.14989","title":"High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont <i>Rhizophagus irregularis</i>","year":2018,"lang":"en","type":"article","venue":"New Phytologist","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":225,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"European Regional Development Fund; Ontario Ministry of Research and Innovation; Natural Sciences and Engineering Research Council of Canada; European Commission; Joint Genome Institute; European Social Fund; U.S. Department of Energy; Ontario Ministry of Research, Innovation and Science; Agence Nationale de la Recherche; National Science Foundation","keywords":"Rhizophagus irregularis; Biology; Genome; Symbiosis; Gene; Genetics; Genetic diversity; Intraspecific competition; Genetic variation; Evolutionary biology; Arbuscular mycorrhizal; Ecology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002458897,0.0001873862,0.0002078968,0.00002040702,0.0005306766,0.00008619432,0.000686542,0.0001400318,0.002128779],"category_scores_gemma":[0.00007727045,0.00006915603,0.0001191119,0.0003836307,0.0000484057,0.0001400445,0.000193434,0.0002803514,0.0008222985],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004197519,"about_ca_system_score_gemma":0.00001645497,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007078677,"about_ca_topic_score_gemma":0.003454514,"domain_scores_codex":[0.9986578,0.0001087492,0.0002214229,0.0003869176,0.0002470649,0.0003780386],"domain_scores_gemma":[0.9991227,0.0004877969,0.00008039406,0.0001569956,0.00005390461,0.00009816566],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001271903,0.001379597,0.423906,0.00002724947,0.00012948,0.000278855,0.00335594,0.001278222,0.1444079,0.0873908,0.3168029,0.01977125],"study_design_scores_gemma":[0.0008373993,0.0018504,0.6914052,0.0001126975,0.0001684009,0.0004586878,0.002284317,0.007086103,0.005920012,0.09281212,0.1951399,0.001924776],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9897078,0.0003966257,0.0002577123,0.002769466,0.0005547551,0.0002807861,0.0004577212,0.00008163545,0.005493537],"genre_scores_gemma":[0.9965013,0.0002384979,0.0002717051,0.001191627,0.0008966582,0.000008584628,0.000480173,0.000001158028,0.0004103337],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2674992,"threshold_uncertainty_score":0.9999557,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02489447686378896,"score_gpt":0.2158797743348149,"score_spread":0.1909852974710259,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}