{"id":"W2793440556","doi":"10.1111/jpy.12620","title":"Phylogeny and species delineation in the marine diatom<i>Pseudo‐nitzschia</i>(Bacillariophyta) using<i>cox1</i>,<scp>LSU</scp>, and<scp>ITS</scp>2<scp>rRNA</scp>genes: A perspective in character evolution","year":2018,"lang":"en","type":"article","venue":"Journal of Phycology","topic":"Diatoms and Algae Research","field":"Materials Science","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada","funders":"Kementerian Sains, Teknologi dan Inovasi; Ministry of Higher Education, Malaysia","keywords":"Biology; Phylogenetic tree; Phylogenetics; Clade; Internal transcribed spacer; Evolutionary biology; Diatom; Taxon; Gene; Botany; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002694561,0.0003702067,0.0007232351,0.0007888479,0.0002966705,0.0002663095,0.0005498976,0.0003064358,0.00005518404],"category_scores_gemma":[0.002525386,0.0002788809,0.000136794,0.0007924563,0.0005976972,0.0007055142,0.0003613147,0.0007109794,0.00004808719],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003890779,"about_ca_system_score_gemma":0.0003748836,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003058664,"about_ca_topic_score_gemma":0.0008155738,"domain_scores_codex":[0.996249,0.0007384146,0.0009102167,0.0005265742,0.0006986705,0.0008770881],"domain_scores_gemma":[0.996419,0.001437189,0.000717796,0.0002991919,0.0009095512,0.0002172934],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005527553,0.0004887289,0.08131358,0.00007482971,0.00006401914,0.0002021188,0.006180328,0.00005627769,0.9073091,0.002573136,0.0007347924,0.0009478583],"study_design_scores_gemma":[0.003396846,0.001847207,0.9064859,0.0001290145,0.0001159415,0.001261019,0.01380023,0.002529353,0.05017524,0.003835167,0.01629149,0.0001325565],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946644,0.001960284,0.000295484,0.0002303534,0.0007146038,0.0004771432,0.00002928884,0.00001609924,0.001612362],"genre_scores_gemma":[0.9954149,0.00155653,0.0006526241,0.0003408215,0.001674483,0.00002144261,0.000003660737,0.00003638008,0.0002991478],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8571338,"threshold_uncertainty_score":0.9999663,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02211449161217365,"score_gpt":0.2828834503088138,"score_spread":0.2607689586966402,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}