{"id":"W2793538517","doi":"10.1007/s10482-018-1047-3","title":"Phylogenetic framework for the phylum Tenericutes based on genome sequence data: proposal for the creation of a new order Mycoplasmoidales ord. nov., containing two new families Mycoplasmoidaceae fam. nov. and Metamycoplasmataceae fam. nov. harbouring Eperythrozoon, Ureaplasma and five novel genera","year":2018,"lang":"en","type":"article","venue":"Antonie van Leeuwenhoek","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":109,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Polyphyly; Clade; Phylogenetic tree; Monophyly; Genetics; Evolutionary biology; Phylogenetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001269815,0.0007813541,0.000707104,0.003218258,0.002012625,0.002485716,0.001047556,0.0009385984,0.003378648],"category_scores_gemma":[0.001691413,0.000311461,0.0008857825,0.002316597,0.001482209,0.00135315,0.001520969,0.001999076,0.001592181],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001285448,"about_ca_system_score_gemma":0.001563648,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003314022,"about_ca_topic_score_gemma":0.003053039,"domain_scores_codex":[0.9995475,0.0001744264,0.00003797213,0.000113297,0.00005445625,0.00007226669],"domain_scores_gemma":[0.9996301,0.00008171215,0.00008471411,0.00003705646,0.00008215982,0.00008430485],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"observational","study_design_scores_codex":[0.001143454,0.0002537298,0.03878924,0.003760188,0.000948129,0.002570258,0.008403831,0.03711091,0.1366562,0.402182,0.01509064,0.3530915],"study_design_scores_gemma":[0.0001866912,0.000932453,0.08429483,0.002432297,0.0006383376,0.002683769,0.006768603,0.1122547,0.005859972,0.3955867,0.3880304,0.0003312176],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.1800955,0.02216777,0.7542064,0.005710647,0.001087505,0.0006742423,0.004626248,0.002590228,0.02884153],"genre_scores_gemma":[0.5961797,0.009449949,0.3815783,0.0009968784,0.0002421399,0.00057612,0.007007109,0.0003200963,0.00364982],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.003378648,"threshold_uncertainty_score":0.01130277,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04606871844128222,"score_gpt":0.3218464322059419,"score_spread":0.2757777137646596,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}