{"id":"W2793556788","doi":"10.1128/jb.00653-17","title":"The Transcriptional Regulator HlyU Positively Regulates Expression of <i>exsA</i> , Leading to Type III Secretion System 1 Activation in Vibrio parahaemolyticus","year":2018,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Vibrio parahaemolyticus; Secretion; Type three secretion system; Regulator; Microbiology; Vibrio; Transcriptional regulation; Regulation of gene expression; Type VI secretion system; Cell biology; Genetics; Bacteria; Gene; Gene expression; Virulence; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001295156,0.0001743647,0.0001509342,0.0001034941,0.0001196067,0.0002364352,0.000120689,0.0001302665,0.0010412],"category_scores_gemma":[0.0001498808,0.00009025973,0.0001649114,0.00006248373,0.0002690546,0.0001224591,0.0003011985,0.000353592,0.0003043259],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002921901,"about_ca_system_score_gemma":0.0002256695,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004922405,"about_ca_topic_score_gemma":0.0005906702,"domain_scores_codex":[0.9998629,0.0000187466,0.000007894037,0.00003995198,0.00003394881,0.00003651182],"domain_scores_gemma":[0.9999014,0.00003185816,0.0000246169,0.000009851293,0.00001059857,0.0000215598],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004952739,0.00001067349,0.0002660669,0.00000919112,6.039425e-7,0.00001460341,0.000007910337,0.00002080554,0.9992299,0.00005162711,0.00001943473,0.0003196184],"study_design_scores_gemma":[0.0000123426,0.0002149621,0.0179261,0.000007321898,0.000005771317,0.000122399,0.00008828094,0.001098038,0.9792437,0.0001414318,0.001134447,0.000005196635],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954134,0.0007030753,0.002291637,0.0001247776,0.0000343962,0.000008664243,0.0002576636,0.00008035105,0.001086031],"genre_scores_gemma":[0.997633,0.0001608987,0.000749299,0.00008274824,0.000009287372,0.00000992807,0.0003330133,0.0000164633,0.001005308],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0010412,"threshold_uncertainty_score":0.003483176,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0133464786410683,"score_gpt":0.2723084176809493,"score_spread":0.258961939039881,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}