{"id":"W2793556788","doi":"10.1128/jb.00653-17","title":"The Transcriptional Regulator HlyU Positively Regulates Expression of <i>exsA</i> , Leading to Type III Secretion System 1 Activation in Vibrio parahaemolyticus","year":2018,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Vibrio parahaemolyticus; Secretion; Type three secretion system; Regulator; Microbiology; Vibrio; Transcriptional regulation; Regulation of gene expression; Type VI secretion system; Cell biology; Genetics; Bacteria; Gene; Gene expression; Virulence; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005783143,0.0001255112,0.00028583,0.0001144791,0.0001141939,0.00002049727,0.0002033621,0.000139549,0.000006722142],"category_scores_gemma":[0.0002032464,0.00008792484,0.00008258501,0.0001408334,0.0002000176,0.0000202618,0.00007656666,0.0001187154,0.000003136075],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008445339,"about_ca_system_score_gemma":0.0001247029,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009416483,"about_ca_topic_score_gemma":0.00002054798,"domain_scores_codex":[0.9986714,0.0002366816,0.0005204574,0.0001719934,0.0001656231,0.0002339001],"domain_scores_gemma":[0.9988092,0.00006175655,0.0003551616,0.0001671665,0.0005369424,0.00006978583],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00248239,0.00002346988,0.001023939,0.00001954064,0.00005231961,0.000002054551,0.0002297898,0.0000178022,0.9952608,0.00009984786,0.0003839284,0.0004041132],"study_design_scores_gemma":[0.0007051019,0.00186861,0.1033833,0.000252227,0.00001201602,0.00008130964,0.000272449,0.0000234059,0.8896473,0.00002694771,0.003629202,0.00009812776],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979901,0.0001682174,0.0008093534,0.0003950023,0.0003608444,0.0001618248,0.000005598029,0.000003214891,0.0001058694],"genre_scores_gemma":[0.9988375,0.00006151784,0.000442164,0.00004909916,0.0004730794,0.000005128521,0.00001271275,0.00001290984,0.0001058424],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1056135,"threshold_uncertainty_score":0.3585471,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0133464786410683,"score_gpt":0.2723084176809493,"score_spread":0.258961939039881,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}