{"id":"W2793622104","doi":"10.1093/bioinformatics/bty136","title":"ddPCRclust: an R package and Shiny app for automated analysis of multiplexed ddPCR data","year":2018,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Innovative Microfluidic and Catalytic Techniques Innovation","field":"Engineering","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Bottleneck; Digital polymerase chain reaction; Computer science; Throughput; Multiplexing; Interface (matter); Operating system; Embedded system; Polymerase chain reaction; Biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007983243,0.004986834,0.004894137,0.004492544,0.001648365,0.004341807,0.006148663,0.00260892,0.1121015],"category_scores_gemma":[0.03162259,0.00330425,0.004090859,0.003617316,0.001694908,0.003115549,0.004968408,0.005053178,0.1080206],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001115268,"about_ca_system_score_gemma":0.005221795,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00287239,"about_ca_topic_score_gemma":0.004186415,"domain_scores_codex":[0.9945309,0.001939036,0.000454007,0.001458773,0.001175511,0.0004419426],"domain_scores_gemma":[0.9884552,0.007653534,0.001035043,0.001266781,0.001116722,0.000472697],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009888157,0.0001164809,0.003598954,0.006242443,0.001230385,0.0006983319,0.0005784112,0.004611378,0.006776686,0.008024045,0.9261667,0.04096736],"study_design_scores_gemma":[0.001197888,0.0002228735,0.006099238,0.001567065,0.0006836436,0.00132251,0.0002932692,0.04819752,0.02028127,0.05208495,0.8674389,0.0006108866],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.003388251,0.001949623,0.2429283,0.001158813,0.0007794293,0.0006122999,0.2211346,0.5229481,0.005100636],"genre_scores_gemma":[0.02340158,0.001469856,0.4895466,0.001995808,0.0003049636,0.005430356,0.1938574,0.2747667,0.009226733],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.1121015,"threshold_uncertainty_score":0.3750167,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03518436810683422,"score_gpt":0.2955873917552118,"score_spread":0.2604030236483776,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}