{"id":"W2793637911","doi":"10.3389/fgene.2018.00087","title":"STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers","year":2018,"lang":"en","type":"article","venue":"Frontiers in Genetics","topic":"Reproductive Physiology in Livestock","field":"Agricultural and Biological Sciences","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Forskningsrådet om Hälsa, Arbetsliv och Välfärd","keywords":"Biology; Gene; Transcriptome; Brahman; Transcription factor; Gene expression; Wnt signaling pathway; Regulation of gene expression; Genetics; Endocrinology; Internal medicine; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001553573,0.0001865712,0.0003321983,0.00004583799,0.0000652197,0.00001520158,0.0002494304,0.0001574029,0.00003907541],"category_scores_gemma":[0.0001041408,0.00008529038,0.00003194675,0.0004157718,0.000547259,0.00007697429,0.000102877,0.0001230731,6.127082e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003506731,"about_ca_system_score_gemma":0.00001938648,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001381752,"about_ca_topic_score_gemma":0.0003965498,"domain_scores_codex":[0.9984658,0.0001954312,0.000312443,0.0004867417,0.0002120065,0.0003275955],"domain_scores_gemma":[0.9994421,0.00005373764,0.0001703892,0.0001364261,0.00012128,0.00007607051],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002359142,0.0002008943,0.7260591,0.000008870999,0.00007659144,0.000002225468,0.0004289407,0.0000588911,0.2661371,0.00001942517,0.001316549,0.005455513],"study_design_scores_gemma":[0.0003870596,0.001220871,0.977527,0.00004116405,0.00001748814,7.314852e-7,0.0003894564,0.0002654131,0.01808943,0.00168626,0.0001913858,0.0001837423],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998476,0.0004699651,0.0000229164,0.0001449455,0.0003210475,0.0003452263,0.00005057645,0.00002459416,0.0001447195],"genre_scores_gemma":[0.9983624,0.0002071839,0.001069187,0.00002455847,0.0001241364,0.00001793782,0.00005860592,0.000003301733,0.0001326472],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2514679,"threshold_uncertainty_score":0.3478041,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009554807217387367,"score_gpt":0.2032646067969066,"score_spread":0.1937097995795192,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}