{"id":"W2794159470","doi":"10.1186/s12864-018-4558-4","title":"Identification of novel loci associated with maturity and yield traits in early maturity soybean plant introduction lines","year":2018,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Soybean genetics and cultivation","field":"Agricultural and Biological Sciences","cited_by":70,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; Grain Research Centre","funders":"Agriculture and Agri-Food Canada; Canadian Field Crop Research Alliance; Génome Québec; Genome Canada","keywords":"Biology; Quantitative trait locus; Genome-wide association study; Genotyping; Genetics; Maturity (psychological); Single-nucleotide polymorphism; Linkage disequilibrium; Candidate gene; Gene; Biotechnology; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001853457,0.0003122852,0.0002234607,0.0005309148,0.0001614976,0.0001876918,0.0002302387,0.0002878716,0.000870022],"category_scores_gemma":[0.0001771443,0.0002091041,0.0003646695,0.0003342748,0.0001180695,0.00008343785,0.0001986517,0.0004960118,0.0002327359],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002616988,"about_ca_system_score_gemma":0.0001957816,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001559074,"about_ca_topic_score_gemma":0.003743649,"domain_scores_codex":[0.9998984,0.000006810943,0.000008879664,0.00004334011,0.00002520301,0.00001741154],"domain_scores_gemma":[0.9997003,0.0000619999,0.0001360488,0.00001732219,0.00002783474,0.00005646884],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001252825,0.00002895335,0.007442174,0.00002211282,0.00001059166,0.0001179428,0.00004349974,0.00005052078,0.9901767,0.00002930934,0.00001953538,0.001933364],"study_design_scores_gemma":[0.0000595273,0.0004749152,0.8602898,0.00001258239,0.0001030394,0.001265904,0.0001087671,0.001586919,0.1339413,0.00007878381,0.002055798,0.00002268855],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966047,0.0001175694,0.002209996,0.00001957574,0.000003166973,0.00001536773,0.0007073413,0.00004954848,0.0002726238],"genre_scores_gemma":[0.9865914,0.0001286975,0.006961796,0.00006953184,0.000004435714,0.00003975028,0.004352964,0.00004455439,0.001806809],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001559074,"threshold_uncertainty_score":0.003099978,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02884794490153851,"score_gpt":0.2112499160542143,"score_spread":0.1824019711526758,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}