{"id":"W2794511584","doi":"10.6026/97320630014048","title":"Hypothetical endogenous SIV-like antigens in Mauritian cynomolgus macaques","year":2018,"lang":"en","type":"article","venue":"Bioinformation","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Simian immunodeficiency virus; Virology; Antigen; Antibody; Biology; Endogeny; Vaccination; Macaque; Immunology; Rhesus macaque; HIV vaccine; Lentivirus; Virus; Vaccine trial; Viral disease","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001175913,0.00009401682,0.000108007,0.0001469435,0.0001213222,0.00001925664,0.0000943207,0.0001216331,0.0009282168],"category_scores_gemma":[0.0000255053,0.00007849516,0.00003615008,0.0001021737,0.0001751391,0.0001642246,0.00003519838,0.0001000164,0.01335493],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000616248,"about_ca_system_score_gemma":0.00005017903,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001312032,"about_ca_topic_score_gemma":0.0001225422,"domain_scores_codex":[0.9992567,0.00005232199,0.0002095836,0.0001021106,0.00003784614,0.0003414707],"domain_scores_gemma":[0.9997083,0.00002764088,0.00003606376,0.0001530847,0.00004738165,0.00002753048],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001226109,0.001218798,0.03167253,0.0001366258,0.0003938709,0.0001708601,0.01597162,0.000003204824,0.3500607,0.00654756,0.02745206,0.5651461],"study_design_scores_gemma":[0.00724052,0.002510158,0.09226107,0.0000967673,0.00003572111,0.001014616,0.00136251,0.0001826081,0.5062171,0.0006170567,0.3877941,0.0006677903],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9259673,0.0006585887,0.0003464497,0.0003303355,0.0003970199,0.0004940991,0.000130407,0.0001112353,0.0715646],"genre_scores_gemma":[0.9986236,0.0000745315,0.0002467341,0.0001171177,0.00003017769,0.00001941928,0.0003636202,0.000005606149,0.0005191714],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5644783,"threshold_uncertainty_score":0.9999851,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02726858577737255,"score_gpt":0.2556138075882078,"score_spread":0.2283452218108352,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}