{"id":"W2794543459","doi":"10.1074/jbc.ra117.001098","title":"Active site remodeling during the catalytic cycle in metal-dependent fructose-1,6-bisphosphate aldolases","year":2018,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Basic Energy Sciences; National Center for Research Resources; National Institute of General Medical Sciences; National Research Council Canada; Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Government of Canada; National Institutes of Health; University of Saskatchewan; U.S. Department of Energy","keywords":"Chemistry; Stereochemistry; Active site; Aldolase A; Substrate analog; Protonation; Catalytic cycle; Enzyme; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004051258,0.0001235448,0.0002267023,0.0000191851,0.000115681,0.00003897712,0.0002634338,0.0001186909,0.0003759143],"category_scores_gemma":[0.0002655887,0.00006546472,0.00009186002,0.0001057724,0.000158112,0.0001505848,0.00008496259,0.0002806337,0.0000231923],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008463999,"about_ca_system_score_gemma":0.0000295725,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001842906,"about_ca_topic_score_gemma":0.000006760654,"domain_scores_codex":[0.9989732,0.00004258753,0.0003858586,0.0001790957,0.0001980203,0.0002212416],"domain_scores_gemma":[0.9992783,0.00008201368,0.0003006456,0.0001509404,0.000121206,0.00006689715],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001940448,0.00001726647,0.0009229459,0.00001073266,0.000008718105,0.00002858343,0.0001045943,0.0002360168,0.9982317,0.000001946637,0.00001225031,0.0002312095],"study_design_scores_gemma":[0.0003377391,0.00006744355,0.007540246,0.00003406921,0.00001509549,0.0002088037,0.0002206968,0.0000835482,0.9907777,0.0005094885,0.000112647,0.00009250665],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985861,0.0002369624,0.00007504506,0.00009445268,0.0002459337,0.00004089917,0.000009399217,0.0000129479,0.0006982862],"genre_scores_gemma":[0.9990633,0.00004224254,0.0001915573,0.00006419921,0.0005346239,0.000001300466,0.000001711483,0.00000557565,0.00009546526],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007453976,"threshold_uncertainty_score":0.4115998,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01559274862408279,"score_gpt":0.2434445379910169,"score_spread":0.2278517893669341,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}