{"id":"W2794598870","doi":"10.1186/s13104-018-3308-7","title":"A multi-host approach to identify a transposon mutant of Pseudomonas aeruginosa LESB58 lacking full virulence","year":2018,"lang":"en","type":"article","venue":"BMC Research Notes","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de la Recherche Scientifique; Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"Institut universitaire de cardiologie et de pneumologie de Québec, Université Laval; Institute of Infection and Immunity; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Cystic Fibrosis Canada","keywords":"Virulence; Pseudomonas aeruginosa; Mutant; Microbiology; Biology; Transposon mutagenesis; Pathogen; Phenotype; Transposable element; Mutagenesis; Biofilm; Mutation; In vivo; Gene; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001032175,0.0001722446,0.0002163899,0.0001390827,0.0001910146,0.00007207064,0.0003696157,0.0001873176,0.00001679365],"category_scores_gemma":[0.0006258972,0.0001559016,0.0001100996,0.0003379194,0.000391438,0.000009471114,0.0002212433,0.0001726621,0.00004219298],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001837883,"about_ca_system_score_gemma":0.0001408741,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000323238,"about_ca_topic_score_gemma":0.000411347,"domain_scores_codex":[0.9979043,0.0002486167,0.0002918451,0.0005726726,0.0003879274,0.0005946456],"domain_scores_gemma":[0.9987223,0.00007886563,0.00006012197,0.000518315,0.0004409551,0.0001794239],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004740755,0.000141168,0.001620711,0.00007677801,0.00002150959,0.000002670427,0.0002757875,0.000005129846,0.9960633,0.00006417528,0.00006871303,0.001185986],"study_design_scores_gemma":[0.000490897,0.0005642003,0.01279222,0.00008253027,0.000007450186,0.00001612144,0.0001754967,0.0003182263,0.9836247,0.000008250781,0.001725142,0.0001947914],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9912449,0.0001602282,0.007509559,0.00009545813,0.0001131331,0.0004092997,0.00005096244,0.00001427375,0.0004021657],"genre_scores_gemma":[0.9715894,0.00005472404,0.02770264,0.0000464234,0.0004618533,0.00001637728,0.00003502865,0.00002948734,0.0000640427],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02019308,"threshold_uncertainty_score":0.6357483,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1227468230224677,"score_gpt":0.3919650717246631,"score_spread":0.2692182487021954,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}