{"id":"W2794803787","doi":"10.1186/s40168-018-0432-5","title":"Trees, fungi and bacteria: tripartite metatranscriptomics of a root microbiome responding to soil contamination","year":2018,"lang":"en","type":"article","venue":"Microbiome","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":109,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de la Recherche Scientifique; National Research Council Canada; Université de Montréal; McGill University; Espace pour la vie; McGill University and Génome Québec Innovation Centre","funders":"Natural Sciences and Engineering Research Council of Canada; BioFuelNet Canada; Genome Canada","keywords":"Biology; Ascomycota; Basidiomycota; Botany; Soil microbiology; Ecology; Gene; Soil water; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003252373,0.000366403,0.0003248224,0.0005817899,0.0004560563,0.0006475929,0.0001741797,0.0005152667,0.0007755395],"category_scores_gemma":[0.0002717908,0.0001627465,0.0004080299,0.0006655719,0.0001862348,0.0004383067,0.0004347401,0.0004881847,0.0003260147],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000255386,"about_ca_system_score_gemma":0.0003243582,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001115185,"about_ca_topic_score_gemma":0.00228401,"domain_scores_codex":[0.9997109,0.00003115946,0.00001543952,0.000119919,0.00006878904,0.00005376438],"domain_scores_gemma":[0.9997651,0.00004653331,0.00006074809,0.00001824354,0.00005823274,0.00005103817],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001956311,0.000016198,0.009090733,0.0001830312,0.00003350199,0.00004787186,0.0002029644,0.0001347853,0.9837906,0.00008541077,0.0001233945,0.00609583],"study_design_scores_gemma":[0.00002348209,0.0006723549,0.7804846,0.0001317976,0.0003176056,0.0009734304,0.001519694,0.005967606,0.193679,0.0009068835,0.01526634,0.00005718614],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9852695,0.002028281,0.005223484,0.0001160454,0.0000224675,0.00004502124,0.006267121,0.00009337759,0.0009347903],"genre_scores_gemma":[0.9717828,0.001376538,0.01204853,0.0002483177,0.00002801516,0.00008542484,0.01240488,0.00007292377,0.001952527],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001115185,"threshold_uncertainty_score":0.002594471,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01551096012903491,"score_gpt":0.2269863567735387,"score_spread":0.2114753966445038,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}