{"id":"W2794830002","doi":"10.1002/ajb2.1048","title":"Plastid phylogenomic analysis of green plants: A billion years of evolutionary history","year":2018,"lang":"en","type":"article","venue":"American Journal of Botany","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":366,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; NdhF; Eudicots; Clade; Phylogenomics; Monophyly; Evolutionary biology; Botany; Plastid; Sister group; Paraphyly; Phylogenetics; Taxonomy (biology)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001263374,0.00008390348,0.0003551199,0.0001938064,0.0000162417,9.819933e-7,0.0001741946,0.00003268,0.00002123476],"category_scores_gemma":[0.00003840102,0.00007952937,0.0002170129,0.0001803628,0.0004942958,8.903186e-7,0.00005397527,0.00004500952,8.695392e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003716895,"about_ca_system_score_gemma":0.0001303059,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001466094,"about_ca_topic_score_gemma":0.00003075031,"domain_scores_codex":[0.9992175,0.00004718969,0.0003767025,0.0001181457,0.0001262844,0.0001141695],"domain_scores_gemma":[0.9988937,0.00002236622,0.0006581772,0.0001739068,0.0001968652,0.00005500517],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003068334,0.00006237864,0.03044725,0.000003493979,0.001473501,0.000003208473,0.0002773744,0.0001038556,0.9592391,0.000005393294,0.001139251,0.006938412],"study_design_scores_gemma":[0.0004978192,0.00396936,0.9487315,0.00002108268,0.0007095835,0.00004836524,0.0005000283,0.00009344157,0.01908315,0.00003506931,0.02611829,0.0001923359],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957581,0.003760902,0.000131184,0.00002148202,0.0001311472,0.0000267618,0.0000502221,4.482272e-7,0.0001197267],"genre_scores_gemma":[0.9978125,0.0007063709,0.001195743,0.00006253045,0.0001712864,5.609172e-7,0.000002545491,0.000008495575,0.00003995296],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9401559,"threshold_uncertainty_score":0.3243114,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008144765167107569,"score_gpt":0.2164069768262552,"score_spread":0.2082622116591476,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}