{"id":"W2794986303","doi":"10.1186/s12864-018-4579-z","title":"Combining six genome scan methods to detect candidate genes to salinity in the Mediterranean striped red mullet (Mullus surmuletus)","year":2018,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":86,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Total; Centre National de la Recherche Scientifique; Total Foundation; Agence Nationale de la Recherche","keywords":"Biology; Local adaptation; Population genomics; Candidate gene; Genetics; Genomics; Adaptation (eye); Genome; Evolutionary biology; Single-nucleotide polymorphism; Computational biology; Gene; Population; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001075172,0.0004710661,0.000455802,0.001631362,0.0003310731,0.0005179318,0.0003473859,0.0003948574,0.0008924188],"category_scores_gemma":[0.001695451,0.0001707334,0.0007434941,0.0009680216,0.0002320415,0.0001869474,0.0006689529,0.0003103571,0.0001885479],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001974113,"about_ca_system_score_gemma":0.0001952038,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009661696,"about_ca_topic_score_gemma":0.002913784,"domain_scores_codex":[0.9993263,0.0001579442,0.00004778878,0.0002515753,0.0001691352,0.00004723855],"domain_scores_gemma":[0.9987798,0.0006614121,0.0002239537,0.0001012443,0.0001498514,0.00008368435],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001103594,0.0001879169,0.6347561,0.0002757596,0.001086318,0.0004162269,0.0004254507,0.003289196,0.2982332,0.0001589691,0.0002326386,0.05983463],"study_design_scores_gemma":[0.0000443203,0.0005487395,0.9543624,0.0000210688,0.0005952915,0.0006745791,0.0003116534,0.01876999,0.02310429,0.0002106023,0.001319329,0.0000377094],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921778,0.0001721152,0.006904486,0.00002286042,0.00000453869,0.00001722399,0.0004068869,0.00006929792,0.0002248868],"genre_scores_gemma":[0.9668364,0.00009839722,0.03084621,0.00004207913,0.000006245326,0.00005447553,0.001766923,0.00003373365,0.0003155201],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001631362,"threshold_uncertainty_score":0.005686164,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03989525448982535,"score_gpt":0.3098597912038936,"score_spread":0.2699645367140683,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}