{"id":"W2795489302","doi":"10.1101/295329","title":"The impact of endogenous retroviruses on nuclear organization and gene expression","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of General Medical Sciences; School of Medicine, New York University; York University","keywords":"Transposable element; Endogenous retrovirus; Chromatin; Genome; Biology; Retrotransposon; Genetics; Chromosome conformation capture; Gene; Computational biology; Genomic organization; Retrovirus; Heterochromatin; Human genome; Chromosome; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004654633,0.0002697388,0.0001641053,0.0002860536,0.0001559934,0.0009108268,0.000326749,0.0002946662,0.001434425],"category_scores_gemma":[0.0005054033,0.0001642338,0.0002477735,0.0001516193,0.0004067945,0.0002450653,0.0004715916,0.0006801015,0.0003124561],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005432043,"about_ca_system_score_gemma":0.000285772,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007745263,"about_ca_topic_score_gemma":0.001134136,"domain_scores_codex":[0.9993728,0.0001372509,0.00004992126,0.000151252,0.000188536,0.0001002356],"domain_scores_gemma":[0.9993382,0.0002983364,0.0001171962,0.0001116942,0.00007330107,0.00006120325],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004910683,0.00002063896,0.0009206368,0.00002894541,0.000006901527,0.00003079029,0.00001601846,0.0001362334,0.9970311,0.000390136,0.00002519346,0.00134422],"study_design_scores_gemma":[0.000004922486,0.0001799075,0.006086897,0.0000111635,0.00001597053,0.0001248726,0.00005516791,0.002581657,0.9893909,0.0001632459,0.001380374,0.000005046876],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9845508,0.001911008,0.01011747,0.00008385436,0.00005094461,0.00002510696,0.0004710569,0.0001253455,0.002664339],"genre_scores_gemma":[0.9942809,0.000419539,0.002767789,0.00007204108,0.000008280716,0.0000248058,0.0005003934,0.00005717891,0.001869059],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001434425,"threshold_uncertainty_score":0.004798591,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01947036182494064,"score_gpt":0.2066764030100946,"score_spread":0.187206041185154,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}