{"id":"W2795697566","doi":"10.1128/genomea.00207-18","title":"Draft Genome Sequence of the 1,4-Dioxane-Degrading Bacterium Pseudonocardia dioxanivorans BERK-1","year":2018,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"National Institute of General Medical Sciences","keywords":"Biology; Whole genome sequencing; 1,4-Dioxane; Bacteria; Pyrosequencing; Genome; Genetics; Gene; Chemistry; Organic chemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00033248,0.0002140457,0.0002114627,0.00003524528,0.0002494376,0.00003899438,0.0006903055,0.0000844346,0.003552788],"category_scores_gemma":[0.00002066416,0.0001589321,0.0001193422,0.0004790993,0.0005197836,0.0002147752,0.0003618304,0.0001099632,0.001367231],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002422491,"about_ca_system_score_gemma":0.00003549284,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001865918,"about_ca_topic_score_gemma":0.00008831055,"domain_scores_codex":[0.9981959,0.00007791632,0.0003839607,0.0004094131,0.0004802515,0.000452528],"domain_scores_gemma":[0.9990813,0.00001141293,0.0002198644,0.0005316002,0.0000414284,0.000114441],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000014919,0.00004002352,0.05084517,0.000007298059,0.00002542801,0.000001345661,0.0007384262,0.00001124429,0.9474286,0.000006967859,0.0005805765,0.0003000459],"study_design_scores_gemma":[0.0007826731,0.0002535286,0.5219179,0.00003078465,0.0000588487,0.00001641712,0.0001602465,0.00005189914,0.05916645,0.00008161639,0.4168909,0.0005887467],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9872668,0.00003299491,0.0000882788,0.0002772274,0.000803282,0.0003900384,0.0004522235,0.00003243139,0.01065674],"genre_scores_gemma":[0.9963909,0.00005229936,0.0003104618,0.0008597164,0.0001486838,0.000005170196,0.00006860524,0.00001767037,0.002146518],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8882621,"threshold_uncertainty_score":0.9994103,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01640769526102853,"score_gpt":0.2242550848646415,"score_spread":0.207847389603613,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}