{"id":"W2795835438","doi":"10.2217/epi-2017-0064","title":"The DNA Methylation Landscape of Enhancers in The Guinea Pig Hippocampus","year":2018,"lang":"en","type":"article","venue":"Epigenomics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Methylated DNA immunoprecipitation; DNA methylation; Enhancer; Biology; Methylation; Chromatin; Bisulfite sequencing; Molecular biology; Chromatin immunoprecipitation; DNA; Illumina Methylation Assay; Epigenetics of physical exercise; DNA binding site; Bisulfite; Transcription (linguistics); Epigenomics; Genetics; Transcription factor; Promoter; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008059053,0.00008663122,0.0000817937,0.00002661838,0.0001185365,0.0000213004,0.0002592579,0.00008762727,0.000007866764],"category_scores_gemma":[0.0001233982,0.00005605559,0.00005206275,0.00011221,0.000116292,0.000002230131,0.00004553467,0.00005925655,0.00000830555],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001109342,"about_ca_system_score_gemma":0.00005384407,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002110158,"about_ca_topic_score_gemma":0.0003330404,"domain_scores_codex":[0.9992175,0.0001192234,0.0002382614,0.0001627755,0.0001002629,0.0001620372],"domain_scores_gemma":[0.999342,0.00006324693,0.0001210687,0.0003716834,0.00008201666,0.00002004628],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001042414,0.00003401254,0.005858543,0.000006633634,0.00003074735,3.69117e-7,0.0007774706,0.0002008712,0.9510301,0.0005396414,0.0003925078,0.04102486],"study_design_scores_gemma":[0.0003873501,0.0003641506,0.03299341,0.000005780025,0.00001614764,8.470856e-7,0.000382227,0.0003819916,0.8798826,0.00438381,0.08104938,0.0001522907],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9909385,0.002893616,0.001875066,0.0002548593,0.0002240101,0.0001608128,0.000005316148,0.00000265634,0.003645195],"genre_scores_gemma":[0.9979591,0.001089273,0.0003414726,0.0000807388,0.0003572033,0.00001067252,0.0000345984,0.00001123698,0.0001157321],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08065686,"threshold_uncertainty_score":0.228588,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01010857841022597,"score_gpt":0.2616008151417291,"score_spread":0.2514922367315032,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}