{"id":"W2796092606","doi":"10.1128/aem.00275-18","title":"The Protease ClpXP and the PAS Domain Protein DivL Regulate CtrA and Gene Transfer Agent Production in Rhodobacter capsulatus","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Rhodobacter; Gene transfer; Biology; Protease; Gene; Bacterial protein; Horizontal gene transfer; Rhodobacter sphaeroides; Microbiology; Chemistry; Biochemistry; Bacteria; Genetics; Enzyme; Mutant; Phylogenetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000148808,0.0004766973,0.0003002371,0.0003374572,0.000157916,0.0003901835,0.0003578472,0.0003892233,0.0006629808],"category_scores_gemma":[0.0001736688,0.000249873,0.0003012487,0.0001432162,0.0003399075,0.0002287639,0.0004984026,0.0005111312,0.0005140763],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005123016,"about_ca_system_score_gemma":0.0001948055,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00164966,"about_ca_topic_score_gemma":0.001128605,"domain_scores_codex":[0.9998005,0.00002290438,0.00001762878,0.00005441639,0.00006296275,0.00004160493],"domain_scores_gemma":[0.9997062,0.00003520695,0.0001127562,0.00003639598,0.0000432436,0.00006616834],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002011471,0.000005314712,0.0001442664,0.000005255981,8.348718e-7,0.00001419751,0.000004233744,0.00002440882,0.9996256,0.000009987015,0.000005279758,0.0001405682],"study_design_scores_gemma":[0.00001345856,0.0001258824,0.01477896,0.000003439034,0.000006737007,0.0001708763,0.00006170248,0.002321649,0.9820485,0.00003604584,0.0004242582,0.00000849718],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962903,0.0003889772,0.002152922,0.00007932413,0.000007647199,0.00001579047,0.0003298773,0.0001360293,0.0005991904],"genre_scores_gemma":[0.9975642,0.0000729697,0.001000015,0.00002899245,0.000002756683,0.00001440434,0.0003413214,0.0000362895,0.0009391296],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00164966,"threshold_uncertainty_score":0.003717005,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003068284414099443,"score_gpt":0.1569595657616819,"score_spread":0.1538912813475825,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}