{"id":"W2796194205","doi":"10.1098/rsos.171707","title":"Combined morphological and phylogenomic re-examination of malawimonads, a critical taxon for inferring the evolutionary history of eukaryotes","year":2018,"lang":"en","type":"article","venue":"Royal Society Open Science","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Division of Environmental Biology; Natural Sciences and Engineering Research Council of Canada; Danmarks Frie Forskningsfond; Dalhousie University; Tula Foundation","keywords":"Taxon; Phylogenomics; Evolutionary biology; Biology; Phylogenetics; Paleontology; Clade; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000724559,0.00005640435,0.00008769104,0.000008084149,0.0001987338,0.00001167717,0.0005514832,0.00006280371,0.00002035189],"category_scores_gemma":[0.0002394211,0.00004546962,0.00004976981,0.00005242792,0.002339987,0.000009680035,0.0006147258,0.00003762496,5.842427e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004493106,"about_ca_system_score_gemma":0.0001672498,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006842878,"about_ca_topic_score_gemma":0.000005052005,"domain_scores_codex":[0.9993872,0.00003417698,0.0001058678,0.0002267466,0.0001151593,0.0001308168],"domain_scores_gemma":[0.9995064,0.00005209623,0.00006123396,0.0001601417,0.0001833536,0.00003681102],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001735208,0.0001549669,0.04671234,0.00006032201,0.00002852416,4.617955e-7,0.0008071967,0.0000244802,0.9369605,0.005232402,0.008530941,0.001314335],"study_design_scores_gemma":[0.0007374344,0.001547778,0.9044266,0.00002014426,0.00002958603,0.000004925808,0.0004911478,0.006142364,0.0824018,0.0009519582,0.003057339,0.0001888955],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99586,0.0002891694,0.001847885,0.0001430821,0.00009541,0.000299979,0.00003077177,0.000001989021,0.001431689],"genre_scores_gemma":[0.9952765,0.00001414779,0.004254519,0.000170898,0.00003694846,0.00001173718,0.000007552732,0.000002382052,0.0002253678],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8577143,"threshold_uncertainty_score":0.8621778,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0273612193657715,"score_gpt":0.2760444661073609,"score_spread":0.2486832467415894,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}