{"id":"W2796622087","doi":"10.1099/mgen.0.000175","title":"Use of genomics to design a diagnostic assay to discriminate between Streptococcus pneumoniae and Streptococcus pseudopneumoniae","year":2018,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Provincial Laboratory of Public Health; University of British Columbia; BC Centre for Disease Control; University of Alberta Hospital; Alberta Hospital Edmonton; University of Alberta","funders":"","keywords":"Biology; Streptococcus pneumoniae; Genome; Clade; Comparative genomics; Phylogenetic tree; Genetics; Genomics; Microbiology; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001153381,0.0009617694,0.0008086131,0.0008666756,0.0002544141,0.0007317749,0.0004662375,0.0009882974,0.0007177161],"category_scores_gemma":[0.002153034,0.0004790031,0.0005317942,0.000519699,0.0005731455,0.0004786152,0.0004628554,0.0008618343,0.0008931831],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005773065,"about_ca_system_score_gemma":0.0006261452,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004262003,"about_ca_topic_score_gemma":0.0008818296,"domain_scores_codex":[0.9985387,0.0005156462,0.00007140596,0.0003666782,0.000369639,0.0001379552],"domain_scores_gemma":[0.999035,0.0004129853,0.0002588547,0.00007459753,0.0001488021,0.00006973389],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006383071,0.000113107,0.002166166,0.00008933244,0.00001182217,0.00003017762,0.00003787537,0.0007280741,0.986902,0.0005002217,0.0001349118,0.009222495],"study_design_scores_gemma":[0.00003252696,0.0009939387,0.01154035,0.00003874659,0.00005936361,0.0003863013,0.00009620505,0.01589841,0.9647537,0.0009480132,0.005218984,0.00003344701],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.5823281,0.001571208,0.4043694,0.001005035,0.0001628967,0.000963173,0.002507643,0.001432775,0.00565963],"genre_scores_gemma":[0.5945073,0.0006368427,0.3985081,0.000777532,0.00005570786,0.0006862118,0.002412265,0.000126495,0.002289556],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.001153381,"threshold_uncertainty_score":0.006099701,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05584724043814365,"score_gpt":0.2893367749569121,"score_spread":0.2334895345187684,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}