{"id":"W2796628574","doi":"10.1128/msystems.00198-17","title":"Inferring the Minimal Genome of <i>Mesoplasma florum</i> by Comparative Genomics and Transposon Mutagenesis","year":2018,"lang":"en","type":"article","venue":"mSystems","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Fonds de recherche du Québec – Nature et technologies; Université de Sherbrooke; Natural Sciences and Engineering Research Council of Canada; National Institute of Environmental Health Sciences; Defense Advanced Research Projects Agency; Government of Canada","keywords":"Genome; Biology; Transposable element; Transposon mutagenesis; Comparative genomics; Genetics; Genomics; Computational biology; Mycoplasma mycoides; Genome evolution; Functional genomics; Mutagenesis; Cloning (programming); Gene; Mutation; Mycoplasma; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002266447,0.0002409705,0.0002285605,0.0004473272,0.0002761208,0.0004574321,0.0003599121,0.0004013942,0.0005132456],"category_scores_gemma":[0.0005085313,0.0001818334,0.0003873072,0.0002824671,0.0001952905,0.0003638911,0.0002889558,0.0004432962,0.0002328961],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004361146,"about_ca_system_score_gemma":0.0003694213,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001826486,"about_ca_topic_score_gemma":0.0033281,"domain_scores_codex":[0.9999046,0.00001879353,0.000008346451,0.00003024414,0.00001933098,0.00001870998],"domain_scores_gemma":[0.9998704,0.00004736946,0.00003692861,0.00001602755,0.00001089646,0.00001834358],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007784476,0.00001101873,0.002032714,0.00007881037,0.000009074899,0.0001070629,0.00004853246,0.000263559,0.9942057,0.0004361478,0.00002292839,0.002706562],"study_design_scores_gemma":[0.00002814751,0.0003881963,0.06692211,0.0000858042,0.0001746445,0.001377828,0.0007340125,0.01004986,0.9040184,0.002991605,0.01317265,0.00005669365],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9718198,0.000705599,0.02479495,0.0001335875,0.00001354115,0.00003091792,0.001330943,0.0001111149,0.00105943],"genre_scores_gemma":[0.9512289,0.0007052781,0.04304283,0.00008394284,0.000006640415,0.00002909895,0.004443752,0.00007397799,0.0003855556],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001826486,"threshold_uncertainty_score":0.003631651,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04743355544161515,"score_gpt":0.2508138523344538,"score_spread":0.2033802968928387,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}