{"id":"W2797734999","doi":"10.1093/molbev/msy073","title":"DAMBE7: New and Improved Tools for Data Analysis in Molecular Biology and Evolution","year":2018,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":782,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Biology; Bootstrapping (finance); Phylogenetic tree; Pairwise comparison; Phylogenetics; Software; Interface (matter); Function (biology); Computational biology; Evolutionary biology; Data mining; Computer science; Genetics; Artificial intelligence; Mathematics; Gene; Programming language","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01026597,0.004828413,0.005020771,0.006611496,0.002226474,0.004703588,0.006173062,0.002349057,0.0675124],"category_scores_gemma":[0.01935617,0.005066864,0.003498787,0.008286864,0.0014823,0.007386746,0.007249461,0.0103911,0.07845791],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001345254,"about_ca_system_score_gemma":0.003566476,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001925531,"about_ca_topic_score_gemma":0.002405092,"domain_scores_codex":[0.9941595,0.002110513,0.0007146911,0.0009074815,0.001682698,0.0004252585],"domain_scores_gemma":[0.9930986,0.003681401,0.0006419656,0.001228058,0.0008240757,0.000525922],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009135762,0.0002130995,0.002294062,0.004044638,0.0006869225,0.0006466282,0.0009747894,0.003263229,0.03043216,0.02093093,0.7396452,0.1959549],"study_design_scores_gemma":[0.0006650786,0.0001456331,0.003733353,0.000877771,0.0002735901,0.001281861,0.0001549209,0.02521775,0.02750573,0.0476625,0.891959,0.0005229041],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.001900886,0.002077554,0.7122674,0.0007363423,0.0008518729,0.0004727489,0.05102654,0.2257415,0.00492519],"genre_scores_gemma":[0.006543341,0.002028048,0.8443426,0.0008612289,0.0002570095,0.003384951,0.07307147,0.06257296,0.006938351],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.0675124,"threshold_uncertainty_score":0.2258515,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01519336810298367,"score_gpt":0.2924474426532913,"score_spread":0.2772540745503076,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}