{"id":"W2798036670","doi":"10.1101/296483","title":"Creation and multi-omics characterization of a genomically hybrid strain in the nitrogen-fixing symbiotic bacterium <i>Sinorhizobium meliloti</i>","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Replicon; Sinorhizobium meliloti; Biology; Genome; Strain (injury); Genetics; Synthetic biology; Nitrogen fixation; In silico; Gene; Phenotype; Computational biology; Bacterial genome size; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003762959,0.000596867,0.0004483519,0.000482078,0.0002068713,0.0004529544,0.0003345885,0.0003931288,0.0005499843],"category_scores_gemma":[0.0002599088,0.0001902233,0.0004723539,0.0003773506,0.0002454734,0.0001678,0.0005237375,0.00050111,0.0003920592],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002295982,"about_ca_system_score_gemma":0.0001984735,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001047665,"about_ca_topic_score_gemma":0.001397994,"domain_scores_codex":[0.9997149,0.00004782127,0.00003074588,0.00008555434,0.00008739914,0.00003363373],"domain_scores_gemma":[0.9997366,0.00006402622,0.00007592643,0.00004360645,0.00003196062,0.00004789798],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003310614,0.00001444733,0.0002213284,0.00001320123,0.000004334504,0.00002801403,0.000008654828,0.00004501327,0.9992996,0.00001407746,0.000008210983,0.0003099317],"study_design_scores_gemma":[0.00001782647,0.0002792788,0.01443237,0.000006421173,0.00004195473,0.0002868997,0.00009307842,0.002735989,0.9805031,0.00004799196,0.001534951,0.00002011563],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9851021,0.0001736557,0.01043827,0.0001250233,0.00002583257,0.00008793529,0.003284453,0.0002274471,0.0005353651],"genre_scores_gemma":[0.9651529,0.0001730916,0.02681337,0.00006925015,0.000009860887,0.0001153622,0.006295841,0.0001549053,0.001215492],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001047665,"threshold_uncertainty_score":0.002083123,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01303902509971919,"score_gpt":0.1970384857426462,"score_spread":0.183999460642927,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}