{"id":"W2798297832","doi":"10.1101/306902","title":"ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia","funders":"National Human Genome Research Institute; National Institutes of Health; Genome Alberta; Genome British Columbia; Genome Canada","keywords":"Genome; Computer science; Human genome; Sequence assembly; Reference genome; Computational biology; Sequence (biology); Biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002607944,0.000977073,0.0007845871,0.001558284,0.0006476901,0.001506233,0.0013145,0.0006816825,0.01383533],"category_scores_gemma":[0.007086873,0.0008245136,0.001264755,0.001565895,0.000433855,0.0009456145,0.001606885,0.001079149,0.007561162],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005400927,"about_ca_system_score_gemma":0.0009395898,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001352214,"about_ca_topic_score_gemma":0.002853256,"domain_scores_codex":[0.9986518,0.0003081807,0.0001757016,0.0004647746,0.000330116,0.00006938561],"domain_scores_gemma":[0.9961718,0.001427482,0.0005002093,0.001086661,0.0006349855,0.0001789412],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003555204,0.0003119851,0.01135379,0.00300468,0.0008417491,0.001401303,0.001529353,0.02874597,0.510335,0.01106151,0.05119244,0.376667],"study_design_scores_gemma":[0.0003725092,0.0005505524,0.01271881,0.0002300656,0.000259546,0.000757713,0.0004511331,0.2038347,0.6578535,0.007687159,0.1149815,0.0003027549],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.08473295,0.0006736382,0.8062073,0.0003049345,0.0003903442,0.0005025849,0.01713048,0.08613804,0.00391972],"genre_scores_gemma":[0.1040689,0.000228471,0.8604101,0.000104006,0.00005953534,0.0003795754,0.02588799,0.00524017,0.003621269],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01383533,"threshold_uncertainty_score":0.04628384,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01109166397987411,"score_gpt":0.2177971006677123,"score_spread":0.2067054366878382,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}