{"id":"W2798759244","doi":"10.1101/308833","title":"Interspecies DNA acquisition by a naturally competent <i>Acinetobacter baumannii</i> strain","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; Toronto Public Health","funders":"Geriatric Research Education and Clinical Center; NIH Clinical Center; National Institutes of Health; Office of Research and Development; U.S. Department of Veterans Affairs","keywords":"Acinetobacter baumannii; Biology; Antibiotic resistance; Plasmid; Gene; Horizontal gene transfer; Microbiology; Genetics; Klebsiella pneumoniae; Antibiotics; Human pathogen; Transformation (genetics); Multiple drug resistance; Genome; Pseudomonas aeruginosa; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001344894,0.0003018602,0.0002301545,0.0002849746,0.0002246384,0.0003901476,0.0002873117,0.0002882305,0.001219453],"category_scores_gemma":[0.0003999895,0.00010253,0.0002701779,0.0002162748,0.0001465355,0.0001848306,0.0003752387,0.0004510827,0.0004478071],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002555316,"about_ca_system_score_gemma":0.0002276544,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001957135,"about_ca_topic_score_gemma":0.001337559,"domain_scores_codex":[0.9996165,0.00007594461,0.00003455366,0.0000954787,0.0001042552,0.00007325914],"domain_scores_gemma":[0.999716,0.00006652623,0.00007083329,0.00005538727,0.00004969724,0.0000415629],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008723036,0.00008320437,0.002578334,0.00003135107,0.000008454282,0.0001151944,0.00004403364,0.00007149759,0.9947516,0.00007584866,0.00004954336,0.002103652],"study_design_scores_gemma":[0.00003097321,0.001808732,0.06815412,0.00002355655,0.00007435773,0.002830778,0.0005758484,0.003564308,0.9185353,0.0002155222,0.00414935,0.00003715127],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980419,0.0001408283,0.0008680713,0.00005941567,0.00001027588,0.00001506431,0.0002483428,0.00004216047,0.0005739364],"genre_scores_gemma":[0.9969413,0.00008390123,0.001409799,0.00003250312,0.000007287349,0.00001710864,0.0009471116,0.00001842243,0.0005426368],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001957135,"threshold_uncertainty_score":0.004079461,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007304200961953793,"score_gpt":0.2131396369478996,"score_spread":0.2058354359859458,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}