{"id":"W2799063918","doi":"10.1101/308767","title":"Discovery of a <i>Streptococcus pneumoniae</i> serotype 33F capsular polysaccharide locus that lacks <i>wcjE</i> and contains a <i>wcyO</i> pseudogene","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"National Health and Medical Research Council; State Government of Victoria; Bill and Melinda Gates Foundation; Pfizer; Veski; GAVI Alliance; Department of Foreign Affairs and Trade, Australian Government; Australian Government","keywords":"Locus (genetics); Pseudogene; Multilocus sequence typing; Biology; Genetics; Streptococcus pneumoniae; Microbiology; Serotype; Gene; Genome; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002439775,0.0002874662,0.000241646,0.0003731211,0.0002374853,0.0003319014,0.000177179,0.0003098495,0.0005771226],"category_scores_gemma":[0.0003272566,0.0001597361,0.0003939463,0.0003414514,0.0001559684,0.0001097366,0.0002064323,0.0002793361,0.0001850757],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003473165,"about_ca_system_score_gemma":0.0003991368,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003905174,"about_ca_topic_score_gemma":0.005419708,"domain_scores_codex":[0.9998186,0.0000178588,0.00001346431,0.00006969049,0.00003433525,0.00004611917],"domain_scores_gemma":[0.9997028,0.00004987454,0.0001152535,0.0000321981,0.00004184217,0.00005812602],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002209721,0.00005673827,0.09102695,0.0001173321,0.00007593977,0.0004055054,0.0001964123,0.000299757,0.9007999,0.0001050919,0.0001957753,0.006499656],"study_design_scores_gemma":[0.00001774346,0.0003452855,0.9065992,0.00003467749,0.000107461,0.001433421,0.0002904604,0.001872633,0.0861977,0.00004255949,0.003040117,0.00001869446],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981434,0.00009113802,0.0007792798,0.00002240905,0.000004169474,0.00001337126,0.0007154716,0.00001171853,0.0002190422],"genre_scores_gemma":[0.9941678,0.00006507635,0.002383962,0.00006718463,0.000004779492,0.00001171139,0.002972939,0.00001002821,0.0003165599],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003905174,"threshold_uncertainty_score":0.007764876,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01609399352285482,"score_gpt":0.235624405484592,"score_spread":0.2195304119617372,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}