{"id":"W2799410613","doi":"10.7717/peerj.4679","title":"Strain-level genetic diversity of <i>Methylophaga nitratireducenticrescens</i> confers plasticity to denitrification capacity in a methylotrophic marine denitrifying biofilm","year":2018,"lang":"en","type":"article","venue":"PeerJ","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lallemand (Canada); Ste. Anne's Hospital; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Denitrifying bacteria; Biofilm; Denitrification; Anoxic waters; Microbiology; Biology; Strain (injury); Microorganism; Food science; Aerobic denitrification; Acclimatization; Chemistry; Environmental chemistry; Bacteria; Botany; Ecology; Nitrogen; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002252349,0.000214477,0.0002766082,0.0001429486,0.0001896299,0.00002297725,0.0003338639,0.00009220579,0.0007013999],"category_scores_gemma":[0.00009636921,0.0002078578,0.00008251728,0.000532084,0.0003224364,0.0001211461,0.0004580606,0.0001288914,0.0002747656],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002071362,"about_ca_system_score_gemma":0.000022468,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003682905,"about_ca_topic_score_gemma":0.001272189,"domain_scores_codex":[0.9982765,0.0001226792,0.0003299558,0.0004306592,0.0004358003,0.0004043903],"domain_scores_gemma":[0.9993519,0.00006559908,0.0001090387,0.0002375332,0.00004789208,0.0001880309],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000138907,0.0001972449,0.2574604,0.00001405838,0.00002868037,0.00001572978,0.0008931102,0.00006876187,0.7381473,0.00002109223,0.00007479668,0.002939913],"study_design_scores_gemma":[0.0006781204,0.0001557574,0.6048898,0.000009923569,0.00005160534,0.000008756257,0.00008183879,0.0003027201,0.3933185,0.0002861232,0.00004209879,0.0001747133],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975525,0.000008491386,0.001095934,0.0001043464,0.00009946535,0.000399627,0.00007964019,0.00002851327,0.0006315208],"genre_scores_gemma":[0.9582636,0.000004652394,0.04143383,0.00006630001,0.000048316,0.000009629343,0.00001337035,0.00001406913,0.0001461789],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3474294,"threshold_uncertainty_score":0.8476194,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06174612542572518,"score_gpt":0.2420658171199429,"score_spread":0.1803196916942177,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}