{"id":"W2799868407","doi":"10.1371/journal.pone.0196290","title":"Bifidobacteria isolated from vaginal and gut microbiomes are indistinguishable by comparative genomics","year":2018,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; University of Saskatchewan","keywords":"Bifidobacterium breve; Biology; Bifidobacterium longum; Microbiome; Bifidobacterium; Genome; Metagenomics; Gut flora; Comparative genomics; Human gastrointestinal tract; Microbiology; Genomics; Genetics; Lactobacillus; Bacteria; Gene; Immunology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002198814,0.00032994,0.0005012366,0.0008716933,0.0004688393,0.0009075095,0.0001745828,0.0003597912,0.001150183],"category_scores_gemma":[0.0006078923,0.0001874509,0.0004126348,0.001266402,0.0002667328,0.0003361986,0.0007502406,0.000440027,0.0003751349],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001597649,"about_ca_system_score_gemma":0.0002738141,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00200114,"about_ca_topic_score_gemma":0.002011538,"domain_scores_codex":[0.9996221,0.00003660203,0.00004028862,0.0001088546,0.000100767,0.00009130646],"domain_scores_gemma":[0.9996959,0.00005440167,0.00007804371,0.00003734892,0.00007160409,0.00006265692],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002221536,0.00003728881,0.01491133,0.0001559985,0.00005622405,0.0001592655,0.0002927819,0.00004674492,0.9759535,0.0000789694,0.00007751249,0.008008408],"study_design_scores_gemma":[0.00003396052,0.0006989542,0.8232793,0.0001535552,0.0002800584,0.003485744,0.002027137,0.000929752,0.1578908,0.000374828,0.01080997,0.00003584282],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9901353,0.001874489,0.002931791,0.00008246303,0.00002647237,0.00005107142,0.002784703,0.00004596404,0.002067837],"genre_scores_gemma":[0.9746533,0.001461651,0.00999697,0.0001588373,0.00001039543,0.00009302795,0.01226627,0.0000512733,0.001308364],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00200114,"threshold_uncertainty_score":0.003979027,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03062656620491162,"score_gpt":0.2471532575520192,"score_spread":0.2165266913471076,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}