{"id":"W2800056691","doi":"10.1101/320069","title":"The Evolution and Sequence Diversity of FhuA in <i>Salmonella</i> and <i>Escherichia</i>","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Escherichia coli; Operon; Microbiology; Phylogenetic tree; Genetics; Sequence analysis; Pathogenicity island; Salmonella; Enterobacteriaceae; Gene; Peptide sequence; Phylogenetics; Horizontal gene transfer; Colicin; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001941496,0.0001828815,0.0002025995,0.001178939,0.000215081,0.0003720641,0.0001667962,0.0003032416,0.000315243],"category_scores_gemma":[0.0004581934,0.0001352569,0.0002770244,0.0007474155,0.0002230184,0.0001427715,0.0002911254,0.000216787,0.0001866172],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002046542,"about_ca_system_score_gemma":0.0001490581,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001776497,"about_ca_topic_score_gemma":0.001528258,"domain_scores_codex":[0.9998199,0.00002965807,0.00001696674,0.00005345895,0.00003529743,0.00004475489],"domain_scores_gemma":[0.9995669,0.00007710246,0.0001400084,0.00003207336,0.00009373132,0.00009014525],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006178964,0.00005782536,0.09300995,0.0001011245,0.00007808489,0.0002865109,0.0006076021,0.0002415574,0.8960645,0.0001586876,0.00007591582,0.008700268],"study_design_scores_gemma":[0.0000121542,0.0004369006,0.9539617,0.00003056043,0.00009544666,0.001535531,0.0009249049,0.001297861,0.03946737,0.0001109876,0.002100468,0.00002621546],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993205,0.0001268012,0.0002101219,0.000009547077,0.000001689502,0.000004001683,0.0001505984,0.000002797955,0.0001739762],"genre_scores_gemma":[0.9987178,0.00006925505,0.0004039013,0.00001379505,0.000002940314,0.000005677931,0.0006259084,0.00000397247,0.0001566319],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001776497,"threshold_uncertainty_score":0.00353235,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009635153116804619,"score_gpt":0.1999005804853057,"score_spread":0.190265427368501,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}